Nothing
# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
#'@name genepop-utils
#'@title Programming utilities
#'@description \code{getVersion} returns the version number of the C++ code (the same number that identifies the C++ executable). \code{set_restriction(TRUE)} sets the maximum number of populations and of loci to 300.
#'@param set logical: whether to set restrictions on number of populations and of loci
getVersion <- function() {
.Call('_genepop_getVersion', PACKAGE = 'genepop')
}
#' Set random generator seed (except for Mantel test)
#' @usage setRandomSeed(seed)
#' @param seed integer: the new seed
setRandomSeed <- function(seed) {
invisible(.Call('_genepop_setRandomSeed', PACKAGE = 'genepop', seed))
}
#' Set random generator seed for Mantel test
#' @usage setMantelSeed(seed)
#' @param seed integer: the new seed
setMantelSeed <- function(seed) {
invisible(.Call('_genepop_setMantelSeed', PACKAGE = 'genepop', seed))
}
RHWEachLocusEachPopulationHD <- function(inputFile, outputFile, enumeration, dememorization, batches, iterations) {
.Call('_genepop_RHWEachLocusEachPopulationHD', PACKAGE = 'genepop', inputFile, outputFile, enumeration, dememorization, batches, iterations)
}
RHWEachLocusEachPopulationHE <- function(inputFile, outputFile, enumeration, dememorization, batches, iterations) {
.Call('_genepop_RHWEachLocusEachPopulationHE', PACKAGE = 'genepop', inputFile, outputFile, enumeration, dememorization, batches, iterations)
}
RHWEachLocusEachPopulationProbability <- function(inputFile, outputFile, enumeration, dememorization, batches, iterations) {
.Call('_genepop_RHWEachLocusEachPopulationProbability', PACKAGE = 'genepop', inputFile, outputFile, enumeration, dememorization, batches, iterations)
}
RHWGlobalHD <- function(inputFile, outputFile, dememorization, batches, iterations) {
.Call('_genepop_RHWGlobalHD', PACKAGE = 'genepop', inputFile, outputFile, dememorization, batches, iterations)
}
RHWGlobalHE <- function(inputFile, outputFile, dememorization, batches, iterations) {
.Call('_genepop_RHWGlobalHE', PACKAGE = 'genepop', inputFile, outputFile, dememorization, batches, iterations)
}
RHWEachLocusEachPopulationHDWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RHWEachLocusEachPopulationHDWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RHWEachLocusEachPopulationHEWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RHWEachLocusEachPopulationHEWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RHWEachLocusEachPopulationProbabilityWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RHWEachLocusEachPopulationProbabilityWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RHWGlobalHDWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RHWGlobalHDWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RHWGlobalHEWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RHWGlobalHEWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RGDEachPairLociEachPopulation <- function(inputFile, outputFile, dememorization, batches, iterations) {
.Call('_genepop_RGDEachPairLociEachPopulation', PACKAGE = 'genepop', inputFile, outputFile, dememorization, batches, iterations)
}
RGDGenotypicContingency <- function(inputFile, outputFile) {
.Call('_genepop_RGDGenotypicContingency', PACKAGE = 'genepop', inputFile, outputFile)
}
RGDEachPairLociEachPopulationWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RGDEachPairLociEachPopulationWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RPDGenicAllPopulationDifferentiation <- function(inputFile, outputFile, dememorization, batches, iterations) {
.Call('_genepop_RPDGenicAllPopulationDifferentiation', PACKAGE = 'genepop', inputFile, outputFile, dememorization, batches, iterations)
}
RPDGenicAllPairPopulationDifferentiation <- function(inputFile, outputFile, dememorization, batches, iterations) {
.Call('_genepop_RPDGenicAllPairPopulationDifferentiation', PACKAGE = 'genepop', inputFile, outputFile, dememorization, batches, iterations)
}
RPDGenotypicAllPopulationDifferentiation <- function(inputFile, outputFile, dememorization, batches, iterations) {
.Call('_genepop_RPDGenotypicAllPopulationDifferentiation', PACKAGE = 'genepop', inputFile, outputFile, dememorization, batches, iterations)
}
RPDGenotypicAllPairPopulationDifferentiation <- function(inputFile, outputFile, dememorization, batches, iterations) {
.Call('_genepop_RPDGenotypicAllPairPopulationDifferentiation', PACKAGE = 'genepop', inputFile, outputFile, dememorization, batches, iterations)
}
RPDGenicAllPopulationDifferentiationWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RPDGenicAllPopulationDifferentiationWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RPDGenicAllPairPopulationDifferentiationWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RPDGenicAllPairPopulationDifferentiationWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RPDGenotypicAllPopulationDifferentiationWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RPDGenotypicAllPopulationDifferentiationWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RPDGenotypicAllPairPopulationDifferentiationWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RPDGenotypicAllPairPopulationDifferentiationWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RAnalyzingSingleContingencyTable <- function(inputFile, dememorization, batches, iterations) {
.Call('_genepop_RAnalyzingSingleContingencyTable', PACKAGE = 'genepop', inputFile, dememorization, batches, iterations)
}
RAnalyzingSingleContingencyTableWithSettingsFile <- function(inputFile, settingsFile) {
.Call('_genepop_RAnalyzingSingleContingencyTableWithSettingsFile', PACKAGE = 'genepop', inputFile, settingsFile)
}
RNmEstimates <- function(inputFile, outputFile, dataType) {
.Call('_genepop_RNmEstimates', PACKAGE = 'genepop', inputFile, outputFile, dataType)
}
RDescriptifAlleleAndGenotypeFrequenciesPerLocusPerSample <- function(inputFile, outputFile) {
.Call('_genepop_RDescriptifAlleleAndGenotypeFrequenciesPerLocusPerSample', PACKAGE = 'genepop', inputFile, outputFile)
}
RDescriptifGeneDiversitiesAndFisUsingAlleleIdentity <- function(inputFile, outputFile, dataType) {
.Call('_genepop_RDescriptifGeneDiversitiesAndFisUsingAlleleIdentity', PACKAGE = 'genepop', inputFile, outputFile, dataType)
}
RDescriptifGeneDiversitiesAndFisUsingAlleleSize <- function(inputFile, outputFile, dataType) {
.Call('_genepop_RDescriptifGeneDiversitiesAndFisUsingAlleleSize', PACKAGE = 'genepop', inputFile, outputFile, dataType)
}
REstimatingSpatialStructureAlleleIdentyAllPopulations <- function(inputFile, outputFile, dataType) {
.Call('_genepop_REstimatingSpatialStructureAlleleIdentyAllPopulations', PACKAGE = 'genepop', inputFile, outputFile, dataType)
}
REstimatingSpatialStructureAlleleIdentyAllPopulationsPairs <- function(inputFile, outputFile, dataType) {
.Call('_genepop_REstimatingSpatialStructureAlleleIdentyAllPopulationsPairs', PACKAGE = 'genepop', inputFile, outputFile, dataType)
}
REstimatingSpatialStructureAlleleSizeAllPopulations <- function(inputFile, outputFile, dataType) {
.Call('_genepop_REstimatingSpatialStructureAlleleSizeAllPopulations', PACKAGE = 'genepop', inputFile, outputFile, dataType)
}
REstimatingSpatialStructureAlleleSizeAllPopulationsPairs <- function(inputFile, outputFile, dataType) {
.Call('_genepop_REstimatingSpatialStructureAlleleSizeAllPopulationsPairs', PACKAGE = 'genepop', inputFile, outputFile, dataType)
}
RIsolationByDistanceBetweenIndividuals <- function(inputFile, outputFile, dataType, statistic, geographicScale, CIcoverage, testPoint, minimalDistance, maximalDistance, mantelPermutations, mantelRankTest, bootstrapMethod, bootstrapNsim) {
.Call('_genepop_RIsolationByDistanceBetweenIndividuals', PACKAGE = 'genepop', inputFile, outputFile, dataType, statistic, geographicScale, CIcoverage, testPoint, minimalDistance, maximalDistance, mantelPermutations, mantelRankTest, bootstrapMethod, bootstrapNsim)
}
RIsolationByDistanceBetweenGroups <- function(inputFile, outputFile, dataType, statistic, geographicScale, CIcoverage, testPoint, minimalDistance, maximalDistance, mantelPermutations, mantelRankTest, bootstrapMethod, bootstrapNsim) {
.Call('_genepop_RIsolationByDistanceBetweenGroups', PACKAGE = 'genepop', inputFile, outputFile, dataType, statistic, geographicScale, CIcoverage, testPoint, minimalDistance, maximalDistance, mantelPermutations, mantelRankTest, bootstrapMethod, bootstrapNsim)
}
RIsolationByDistanceBetweenIndividualsWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RIsolationByDistanceBetweenIndividualsWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RIsolationByDistanceBetweenGroupsWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RIsolationByDistanceBetweenGroupsWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
REcumenicismFstat <- function(inputFile, outputFile) {
.Call('_genepop_REcumenicismFstat', PACKAGE = 'genepop', inputFile, outputFile)
}
REcumenicismBiosysLetter <- function(inputFile, outputFile) {
.Call('_genepop_REcumenicismBiosysLetter', PACKAGE = 'genepop', inputFile, outputFile)
}
REcumenicismBiosysNumber <- function(inputFile, outputFile) {
.Call('_genepop_REcumenicismBiosysNumber', PACKAGE = 'genepop', inputFile, outputFile)
}
REcumenicismLinkdos <- function(inputFile, outputFile) {
.Call('_genepop_REcumenicismLinkdos', PACKAGE = 'genepop', inputFile, outputFile)
}
RNullAlleleEstimateAlleleFrequencies <- function(inputFile, outputFile, nullAlleleMethod, CIcoverage) {
.Call('_genepop_RNullAlleleEstimateAlleleFrequencies', PACKAGE = 'genepop', inputFile, outputFile, nullAlleleMethod, CIcoverage)
}
RDiploidisationHaploidData <- function(inputFile, outputFile) {
.Call('_genepop_RDiploidisationHaploidData', PACKAGE = 'genepop', inputFile, outputFile)
}
RRelabelingAlleles <- function(inputFile, outputFile) {
.Call('_genepop_RRelabelingAlleles', PACKAGE = 'genepop', inputFile, outputFile)
}
RConversionToIndividualDataWithPopulationNames <- function(inputFile, outputFile) {
.Call('_genepop_RConversionToIndividualDataWithPopulationNames', PACKAGE = 'genepop', inputFile, outputFile)
}
RConversionToIndividualDataWithIndividualNames <- function(inputFile, outputFile) {
.Call('_genepop_RConversionToIndividualDataWithIndividualNames', PACKAGE = 'genepop', inputFile, outputFile)
}
RRandomSamplingOfHaploidGenotypesFromDiploidOnes <- function(inputFile, outputFile) {
.Call('_genepop_RRandomSamplingOfHaploidGenotypesFromDiploidOnes', PACKAGE = 'genepop', inputFile, outputFile)
}
RNullAlleleEstimateAlleleFrequenciesWithSettingsFile <- function(inputFile, outputFile, settingsFile) {
.Call('_genepop_RNullAlleleEstimateAlleleFrequenciesWithSettingsFile', PACKAGE = 'genepop', inputFile, outputFile, settingsFile)
}
RHWtableHD <- function(inputFile, enumeration, dememorization, batches, iterations) {
.Call('_genepop_RHWtableHD', PACKAGE = 'genepop', inputFile, enumeration, dememorization, batches, iterations)
}
RHWtableHE <- function(inputFile, enumeration, dememorization, batches, iterations) {
.Call('_genepop_RHWtableHE', PACKAGE = 'genepop', inputFile, enumeration, dememorization, batches, iterations)
}
RHWtableProbability <- function(inputFile, enumeration, dememorization, batches, iterations) {
.Call('_genepop_RHWtableProbability', PACKAGE = 'genepop', inputFile, enumeration, dememorization, batches, iterations)
}
RHWtableAlleleFrequenciesExpectedGenotypesFis <- function(inputFile) {
.Call('_genepop_RHWtableAlleleFrequenciesExpectedGenotypesFis', PACKAGE = 'genepop', inputFile)
}
RHWtableHDWithSettingsFile <- function(inputFile, settingsFile) {
.Call('_genepop_RHWtableHDWithSettingsFile', PACKAGE = 'genepop', inputFile, settingsFile)
}
RHWtableHEWithSettingsFile <- function(inputFile, settingsFile) {
.Call('_genepop_RHWtableHEWithSettingsFile', PACKAGE = 'genepop', inputFile, settingsFile)
}
RHWtableProbabilityWithSettingsFile <- function(inputFile, settingsFile) {
.Call('_genepop_RHWtableProbabilityWithSettingsFile', PACKAGE = 'genepop', inputFile, settingsFile)
}
Rinterrupt_genepop <- function() {
invisible(.Call('_genepop_Rinterrupt_genepop', PACKAGE = 'genepop'))
}
Rset_restriction <- function(set) {
invisible(.Call('_genepop_Rset_restriction', PACKAGE = 'genepop', set))
}
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