pmx_config: This function can be used to define the pmx configuration...

Description Usage Arguments Details Value Examples

View source: R/config.R

Description

This function can be used to define the pmx configuration used in plots. e.g. Monolox/Nonmem

Usage

1
pmx_config(sys = "mlx", inputs, plots, ...)

Arguments

sys

charcarter system used , monolix,nonmem,...

inputs

charcater path to the inputs settings file (yaml format)

plots

charcater path to the inputs settings file (yaml format)

...

extra arguments not used

Details

To create a controller user can create a pmxConfig object using
- either an input template file
- or a plot template file
- or both.
By default the 'standing' configuration will be used.

Value

pmxConfig object

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
# *************** Create a controller using custom plot configuration ***************** ------

library(ggPMX)
theophylline <- file.path(
  system.file(package = "ggPMX"), "testdata",
  "theophylline"
)
WORK_DIR <- file.path(theophylline, "Monolix")
input_file <- file.path(theophylline, "data_pk.csv")


# create a controller with a custom plots template
ctr <-  pmx_mlx(
  config = pmx_config(
    plots=file.path( system.file(package = "ggPMX"),"examples/plots.yaml"),
    inputs = system.file(package = "ggPMX","examples/custom_inputs.yaml")
  ),
  directory = WORK_DIR,
  input = input_file,
  dv = "Y",
  dvid = "DVID",
  cats = c("SEX"),
  conts = c("WT0", "AGE0"),
  strats = "STUD"
)

## get the list of plots
ctr %>% plots
ctr %>% get_plot("custom_res_time")
ctr %>% get_plot("custom_npde_time")

ggPMX documentation built on May 29, 2021, 5:06 p.m.