pmx_config: This function can be used to define the pmx configuration...

In ggPMX: 'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models

This function can be used to define the pmx configuration used in plots. e.g. Monolix/Nonmem

Description

This function can be used to define the pmx configuration used in plots. e.g. Monolix/Nonmem

Usage

pmx_config(sys = "mlx", inputs, plots, ...)

Arguments

sys	charcarter system used , monolix,nonmem,...
inputs	charcater path to the inputs settings file (yaml format)
plots	charcater path to the inputs settings file (yaml format)
...	extra arguments not used

Details

To create a controller user can create a pmxConfig object using
- either an input template file
- or a plot template file
- or both.
By default the 'standing' configuration will be used.

Value

pmxConfig object

Examples

# *************** Create a controller using custom plot configuration ***************** ------

library(ggPMX)
theophylline <- file.path(
  system.file(package = "ggPMX"), "testdata",
  "theophylline"
)
WORK_DIR <- file.path(theophylline, "Monolix")
input_file <- file.path(theophylline, "data_pk.csv")


# create a controller with a custom plots template
ctr <-  pmx_mlx(
  config = pmx_config(
    plots=file.path( system.file(package = "ggPMX"),"examples/plots.yaml"),
    inputs = system.file(package = "ggPMX","examples/custom_inputs.yaml")
  ),
  directory = WORK_DIR,
  input = input_file,
  dv = "Y",
  dvid = "DVID",
  cats = c("SEX"),
  conts = c("WT0", "AGE0"),
  strats = "STUD"
)

## get the list of plots
ctr %>% plots
ctr %>% get_plot("custom_res_time")
ctr %>% get_plot("custom_npde_time")

ggPMX documentation built on May 29, 2024, 1:40 a.m.