Files in ggPMX
'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models

cleanup
MD5
DESCRIPTION
README.md
NAMESPACE
cleanup.win
inst/templates/mlx/standing.ipmx
inst/templates/mlx18/standing.ipmx
inst/doc/ggPMX-guide.R inst/doc/ggPMX-guide.pdf inst/doc/ggPMX-guide.Rmd
inst/init/standing.ppmx
inst/init/gpar.yaml
inst/init/abbrev.yaml
inst/init/defaults.yaml
inst/examples/endpoint.R inst/examples/uc_review.Rmd inst/examples/qq.R inst/examples/individual.R inst/examples/ggpmx_nlmixr.R inst/examples/controller.R inst/examples/pmx_config.R inst/examples/residual.R inst/examples/eta_matrix.R inst/examples/distribution.R
inst/examples/custom_inputs.yaml
inst/examples/pmx_report.R inst/examples/pmx-settings.R
inst/examples/plots.yaml
inst/examples/eta_cov.R inst/examples/vpc.R inst/examples/templates/custom_report.Rmd inst/examples/templates/misc.Rmd
inst/rmarkdown/templates/standing/template.yaml
inst/rmarkdown/templates/standing/skeleton/skeleton.Rmd
inst/rmarkdown/templates/individual/template.yaml
inst/rmarkdown/templates/individual/skeleton/skeleton.Rmd
inst/testdata/theophylline/sim.csv
inst/testdata/theophylline/data_pk.csv
inst/testdata/theophylline/Monolix/estimates.txt
inst/testdata/theophylline/Monolix/finegrid.txt
inst/testdata/theophylline/Monolix/indiv_eta.txt
inst/testdata/theophylline/Monolix/predictions.txt
inst/testdata/theophylline/Monolix/pop_parameters.txt
inst/testdata/1_popPK_model/project.mlxtran
inst/testdata/1_popPK_model/PKdata_ggPMX.csv
inst/testdata/1_popPK_model/RESULTS/fulltimes.txt
inst/testdata/1_popPK_model/RESULTS/estimates.txt
inst/testdata/1_popPK_model/RESULTS/finegrid.txt
inst/testdata/1_popPK_model/RESULTS/indiv_parameters.txt
inst/testdata/1_popPK_model/RESULTS/indiv_eta.txt
inst/testdata/1_popPK_model/RESULTS/predictions.txt
inst/testdata/1_popPK_model/RESULTS/pop_parameters.txt
inst/testdata/pk_pd/pk_pd.csv
inst/testdata/pk_pd/pk_pd.mlxtran
inst/testdata/pk_pd/RESULTS/finegrid1.txt
inst/testdata/pk_pd/RESULTS/estimates.txt
inst/testdata/pk_pd/RESULTS/indiv_parameters.txt
inst/testdata/pk_pd/RESULTS/predictions2.txt
inst/testdata/pk_pd/RESULTS/finegrid2.txt
inst/testdata/pk_pd/RESULTS/predictions1.txt
inst/testdata/pk_pd/RESULTS/indiv_eta.txt
inst/testdata/pk_pd/RESULTS/pop_parameters.txt
inst/extra/run-oq.R
vignettes/ggPMX_arch.png
vignettes/.install_extras
vignettes/ggPMX-guide.Rmd R/plot-themes.R R/plot-vpc.R R/zzz.R R/ggPMX-options.R R/pmx-plots-quantile.R R/ggforce-facet-paginate.R R/pmx-plots-scatter.R R/assertions.R R/ggPMX-package.R R/pmx-report.R R/classInt.R R/pmx-filter.R R/pmx-plots-individual.R R/plot-individual.R R/plot-eta-pairs.R R/utils.R R/nlmixr.R R/pmx-all-plots.R R/plot-base.R R/pmx-add-plot.R R/pmx-data.R R/pmx-plots-vpc.R R/pmx-plots-distibution.R R/pmx-plots-eta-cov.R R/plot-eta-cov.R R/config.R R/plot-residual.R R/pmx-plots-density.R R/pmx-post_load.R R/pmx-reader.R R/plot-qq.R R/pmx-all-compute.R R/plot-density.R R/pmx-plots-matrix.R R/pmxClass.R R/generics.R R/plot-distribution.R R/gpar.R man/input_finegrid.Rd man/pmx_update.Rd man/plot_names.Rd man/parse_mlxtran.Rd man/l_left_join.Rd man/pmx_gpar.Rd man/plot_pmx.distrib.Rd man/print.pmxClass.Rd man/gtable_remove_grobs.Rd man/pmx_vpc_rug.Rd man/eta_distribution_plot.Rd man/plot_shrink.Rd man/residual_scatter.Rd man/plot_pmx.individual.Rd man/pmx_qq.Rd man/load_config.Rd man/plot_pmx.pmx_qq.Rd man/get_plot_config.Rd man/getPmxOption.Rd man/read_mlx_pred.Rd man/get_cats.Rd man/pmx_copy.Rd man/get_strats.Rd man/pmxOptions.Rd man/pmx_filter.Rd man/pk_pd.Rd man/get_covariates.Rd man/is.pmx_gpar.Rd man/individual.Rd man/get_data.Rd man/pmx_plot.Rd man/pmx_settings.Rd man/load_data_set.Rd man/get_plot.Rd man/pmx_vpc_pi.Rd man/distrib.Rd man/pmx_vpc_ci.Rd man/load_source.Rd man/plot_pmx.pmx_dens.Rd man/pmx_dens.Rd man/set_abbrev.Rd man/reexports.Rd man/pmx_register_plot.Rd man/add_draft.Rd man/eta_pairs.Rd man/plot_pmx.eta_pairs.Rd man/pmx_config.Rd man/get_occ.Rd man/n_pages.Rd man/plot_pmx.eta_cov.Rd man/pmx_vpc_bin.Rd man/pmx_qq_plot.Rd man/read_input.Rd man/plot_pmx.pmx_gpar.Rd man/FacetWrapPaginate.Rd man/residual.Rd man/pmx_plot_cats.Rd man/get_abbrev.Rd man/pmx_bloq.Rd man/pmx_theme.Rd man/print.pmxConfig.Rd man/pmx_plot_iwres_dens.Rd man/wrap_formula.Rd man/set_data.Rd man/pmx_sim.Rd man/pmx_plot_eta_matrix.Rd man/pk_occ.Rd man/pmx_plot_vpc.Rd man/set_plot.Rd man/plot_pmx.Rd man/plots.Rd man/print.pmx_gpar.Rd man/read_mlx_ind_est.Rd man/ggPMX.Rd man/print.abbreviation.Rd man/plot_pmx.residual.Rd man/facet_wrap_paginate.Rd man/pmx_vpc.Rd man/abbrev.Rd man/eta_cov_plot.Rd man/pmx_plot_individual.Rd man/pmx_get_configs.Rd man/pmx_endpoint.Rd man/pmx_nlmixr.Rd man/pmx_report.Rd man/pmx_vpc_obs.Rd man/get_conts.Rd man/print.configs.Rd man/pmx_report_template.Rd man/pmx_comp_shrink.Rd man/sub-.pmx_gpar.Rd man/read_mlx_par_est.Rd man/theophylline.Rd man/pmx_cov.Rd man/eta_cov.Rd man/pmx.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test-pmx_options.R tests/testthat/test-pmxClass.R tests/testthat/test-pmx_update.R tests/testthat/test-config.R tests/testthat/test-pmx-all-plots.R tests/testthat/helper-reader.R tests/testthat/test-plot-defaults.R tests/testthat/helper-update_plots.R tests/testthat/test-shrinkage.R tests/testthat/test-plot.R tests/testthat/test-gpar.R tests/testthat/helper-pmxClass.R tests/testthat/test-pmx_filter.R tests/testthat/test-utils.R tests/testthat/test-reader.R
ggPMX documentation built on Nov. 19, 2019, 5:07 p.m.