pmx_qq_plot: Quantile-quantile plots

In ggPMX: 'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models

Quantile-quantile plots

Description

Quantile-quantile plots

Quantile-quantile plot of IWRES

Quantile-quantile plot of eta variables

Quantile-quantile plot of NPDE

Quantile-quantile plot of NPD

Quantile-quantile plot of CWRES

Usage

pmx_qq_plot(
  dname,
  point,
  is.reference_line,
  reference_line,
  is.shrink,
  shrink,
  is.hline,
  hline,
  is.vline,
  vline,
  filter,
  strat.facet,
  facets,
  strat.color,
  trans,
  pmxgpar,
  labels,
  axis.title,
  axis.text,
  ranges,
  is.smooth,
  smooth,
  is.band,
  band,
  is.draft,
  draft,
  is.identity_line,
  identity_line,
  scale_x_log10,
  scale_y_log10,
  color.scales,
  ...
)

pmx_plot_iwres_qq(ctr, ...)

pmx_plot_eta_qq(ctr, ...)

pmx_plot_npde_qq(ctr, ...)

pmx_plot_npd_qq(ctr, ...)

pmx_plot_cwres_qq(ctr, ...)

Arguments

dname	name of dataset to be used
point	list geom_point parameters.
is.reference_line	logical if TRUE add reference line to the plot
reference_line	list geom_abline parameters.
is.shrink	logical if TRUE add shrinkage to the plot
shrink	pmxShrinkClass shrinkage graphical parameter or list coercible into one
is.hline	logical if TRUE add horizontal line y=0 ( TRUE by default)
hline	list geom hline graphical parameters
is.vline	logical if TRUE add vertical line x=0 ( TRUE by default)
vline	list geom vline graphical parameters pmx_update parameters
filter	expression filter which will be applied to plotting data.
strat.facet	formula optional stratification parameter by facetting. This split plot by strats(each strat in a facet)
facets	list facet_wrap parameters.
strat.color	character optional stratification parameter by grouping. This will split the plot by group (color) of strat.
trans	character define the transformation to apply on x or y or both variables
pmxgpar	an object of class pmx_gpar
labels	list list containing plot and/or axis labels: title, subtitle, x , y
axis.title	list containing element_text attributes to customize the axis title. (similar to ggplot2 axis.title theme)
axis.text	list containing element_text attributes to customize the axis text (similar to ggplot2 axis.text theme)
ranges	list limits of x/y ranges
is.smooth	logical if set to TRUE add smooth layer
smooth	list geom_smooth graphical/smoothing fun parameters
is.band	logical if TRUE add horizontal band
band	list horizontal band parameters. geom_hline graphical parameters.
is.draft	logical if TRUE add draft layer
draft	list draft layer parameters. geom_text graphical parameters.
is.identity_line	logical if TRUE add an identity line
identity_line	listgeom_abline graphical parameters.
scale_x_log10	logical if TRUE use log10 scale for x axis.
scale_y_log10	logical if TRUE use log10 scale for y axis.
color.scales	list define scales parameter in case of strat.color pmx_settings
...	others graphics parameters passed : pmx_gpar internal function to customize shared graphical parameters pmx_qq quantile-quantile plot object. pmx_update function. pmx_qq parameters
ctr	pmx controller

Value

ggplot2 object

Examples

# *************** basic use ***************** ------

ctr <- theophylline()
ctr %>% pmx_plot_eta_qq
ctr %>% pmx_plot_npde_qq
ctr %>% pmx_plot_iwres_qq

# update graphical parameter  ----------------------

## add reference line
ctr %>% pmx_plot_npde_qq(reference_line=list(color="blue"))

## remove reference line
ctr %>% pmx_plot_eta_qq(reference_line=NULL)


# stratification  ----------------------------------

## categorical stratification color parameter
ctr %>% pmx_plot_iwres_qq(strat.facet=~STUD,strat.color="SEX")
## categorical stratification facetting
ctr %>% pmx_plot_eta_qq(strat.facet = ~SEX)

## do not use symmetric axis
ctr %>% pmx_plot_npde_qq(xmax=FALSE,reference_line=list())

ggPMX documentation built on July 9, 2023, 7:45 p.m.