test-pmx-plots-scatter.R
In ggPMX: 'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models

context("Test Scatter residual plots")
ctr <- theophylline()

#------------------- pmx_plot_dv_pred start -----------------------------------
test_that("pmx_plot_dv_pred: params: controller result: gg, ggplot", {
  expect_true(inherits(pmx_plot_dv_pred(ctr = ctr), c("gg", "ggplot")))
})

test_that("pmx_plot_dv_pred: params: no result: error", {
  expect_error(pmx_plot_dv_pred())
})

test_that("pmx_plot_dv_pred: params: not controller result: error", {
  ctr <- theophylline() %>% get_data("eta")
  expect_error(pmx_plot_dv_pred(ctr = ctr))
})


test_that("pmx_plot_dv_pred: params: ctr; result: list", {
  p <- pmx_plot_dv_pred(ctr)
  expect_true(inherits(p$scales$scales, "list"))
})

test_that("pmx_plot_dv_pred: params: ctr; result: identical inherist of has_scale", {
  p <- pmx_plot_dv_pred(ctr)
  expect_true(inherits(p$scales$has_scale, "ggproto_method"))
})

test_that("pmx_plot_dv_pred: params: ctr_mlx; result: identical scales inherits", {
  mlxpath <- file.path(
    system.file(package = "ggPMX"),
    "testdata",
    "1_popPK_model",
    "project.mlxtran"
  )
  ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing")
  p <- pmx_plot_dv_pred(ctr_mlx)
  expect_true(inherits(p$scales$scales, "list"))
})


test_that("pmx_plot_dv_pred: params: ctr, ylim; result: identical structure", {
  p <- pmx_plot_dv_pred(ctr) + ylim(-5, 5)
  expect_identical(
    p$scales$scales[[1]]$limits,
    c(-5, 5)
  )
})

test_that("pmx_plot_dv_pred: params: not controller result: error",
          {
            ctr <- theophylline() %>% get_data("eta")
            expect_error(pmx_plot_dv_pred(ctr = ctr))
          })


test_that("pmx_plot_dv_pred: params: ctrl result: x and y axes equal by default",
  {
    ctr <- theophylline()
    p <- pmx_plot_dv_pred(ctr)
    expect_equal(
      p[["coordinates"]][["limits"]][["x"]],
      p[["coordinates"]][["limits"]][["y"]]
    )
  }
)

#------------------- pmx_plot_dv_pred end -------------------------------------

#------------------- pmx_plot_iwres_time start --------------------------------
test_that("pmx_plot_iwres_time: params: controller result: gg, ggplot", {
  expect_true(inherits(pmx_plot_iwres_time(ctr = ctr), c("gg", "ggplot")))
})

test_that("pmx_plot_iwres_time: params: no result: error", {
  expect_error(pmx_plot_iwres_time())
})

test_that("pmx_plot_iwres_time: params: not controller result: error", {
  ctr <- theophylline() %>% get_data("eta")
  expect_error(pmx_plot_iwres_time(ctr = ctr))
})


test_that("pmx_plot_iwres_time: params: ctr; result: list", {
  p <- pmx_plot_iwres_time(ctr)
  expect_true(inherits(p$scales$scales, "list"))
})

test_that("pmx_plot_iwres_time: params: ctr; result: identical structure", {
  p <- pmx_plot_iwres_time(ctr)
  expect_identical(p$scales$scales[[1]]$limits, c(-3.3237, 3.3237))
})

test_that("pmx_plot_iwres_time: params: ctr_mlx; result: identical structure", {
  mlxpath <- file.path(
    system.file(package = "ggPMX"),
    "testdata",
    "1_popPK_model",
    "project.mlxtran"
  )
  ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing")
  p <- pmx_plot_iwres_time(ctr_mlx)
  expect_identical(p$scales$scales[[1]]$limits, c(-3.7749, 3.7749))
})


test_that("pmx_plot_iwres_time: params: ctr, ylim; result: identical structure", {
  p <- pmx_plot_iwres_time(ctr) + ylim(-5, 5)
  expect_identical(
    p$scales$scales[[1]]$limits,
    c(-5, 5)
  )
})


#------------------- pmx_plot_iwres_time end ----------------------------------

#------------------- pmx_plot_npde_time start ---------------------------------
test_that("pmx_plot_npde_time: params: controller result: gg", {
  expect_true(inherits(pmx_plot_npde_time(ctr = ctr), "gg"))
})

test_that("pmx_plot_npde_time: params: no result: error", {
  expect_error(pmx_plot_npde_time())
})

test_that("pmx_plot_npde_time: params: not controller result: error", {
  ctr <- theophylline() %>% get_data("eta")
  expect_error(pmx_plot_npde_time(ctr = ctr))
})


test_that("pmx_plot_npde_time: params: ctr, explicit filter; result: identical type", {
  p <- ctr %>% pmx_plot_npde_time(filter = "STUD == 1")
  expect_true(inherits(p, "ggplot"))
})


test_that("pmx_plot_npde_time: params: ctr, implicit filter; result: identical type", {
  filter_string <- "STUD == 1"
  p <- ctr %>% pmx_plot_npde_time(filter = filter_string)

  expect_true(inherits(p, "ggplot"))
})

#------------------- pmx_plot_npde_time end -----------------------------------

#------------------- pmx_plot_npde_pred start ---------------------------------
test_that("pmx_plot_npde_pred: params: controller result: gg, ggplot", {
  expect_true(inherits(pmx_plot_npde_pred(ctr = ctr), c("gg", "ggplot")))
})

test_that("pmx_plot_npde_pred: params: no result: error", {
  expect_error(pmx_plot_npde_pred())
})

test_that("pmx_plot_npde_pred: params: not controller result: error", {
  ctr <- theophylline() %>% get_data("eta")
  expect_error(pmx_plot_npde_pred(ctr = ctr))
})

test_that("pmx_plot_npde_pred: params: ctr; result: list", {
  p <- pmx_plot_npde_pred(ctr)
  expect_true(inherits(p$scales$scales, "list"))
})

test_that("pmx_plot_npde_pred: params: ctr; result: identical structure", {
  p <- pmx_plot_npde_pred(ctr)
  expect_identical(p$scales$scales[[1]]$limits, c(-3.934, 3.934))
})

test_that("pmx_plot_npde_pred: params: ctr_mlx; result: identical scales inherits", {
  mlxpath <- file.path(
    system.file(package = "ggPMX"),
    "testdata",
    "1_popPK_model",
    "project.mlxtran"
  )
  ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing")
  p <- pmx_plot_npde_pred(ctr_mlx)
  expect_true(inherits(p$scales$scales, "list"))
})


test_that("pmx_plot_npde_pred: params: ctr, ylim; result: identical structure", {
  p <- pmx_plot_npde_pred(ctr) + ylim(-5, 5)
  expect_identical(
    p$scales$scales[[1]]$limits,
    c(-5, 5)
  )
})

#------------------- pmx_plot_npde_pred end -----------------------------------

#------------------- pmx_plot_abs_iwres_ipred start ---------------------------

test_that("pmx_plot_abs_iwres_ipred: params: controller result: gg, ggplot", {
  expect_true(inherits(pmx_plot_abs_iwres_ipred(ctr = ctr), c("gg", "ggplot")))
})

test_that("pmx_plot_abs_iwres_time: params: controller result: gg", {
  ctr <- theophylline()
  expect_true(inherits(pmx_plot_abs_iwres_time(ctr = ctr), "gg"))
})

test_that("pmx_plot_abs_iwres_ipred: params: no result: error", {
  expect_error(pmx_plot_abs_iwres_ipred())
})

test_that(
  "pmx_plot_abs_iwres_ipred: params: not controller result: error",
  {
    ctr <- theophylline() %>% get_data("eta")
    expect_error(pmx_plot_abs_iwres_ipred(ctr = ctr))
  }
)


test_that("pmx_plot_abs_iwres_ipred: params: ctr; result: list", {
  p <- pmx_plot_abs_iwres_ipred(ctr)
  expect_true(inherits(p$scales$scales, "list"))
})

test_that("pmx_plot_abs_iwres_ipred: params: ctr; result: identical structure", {
  p <- pmx_plot_abs_iwres_ipred(ctr)
  expect_identical(p$scales$scales, list())
})

test_that("pmx_plot_abs_iwres_ipred: params: ctr_mlx; result: identical structure", {
  mlxpath <- file.path(
    system.file(package = "ggPMX"),
    "testdata",
    "1_popPK_model",
    "project.mlxtran"
  )
  ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing")
  p <- pmx_plot_abs_iwres_ipred(ctr_mlx)
  expect_identical(p$scales$scales, list())
})


test_that("pmx_plot_abs_iwres_ipred: params: ctr, ylim; result: identical structure", {
  p <- pmx_plot_abs_iwres_ipred(ctr) + ylim(-5, 5)
  expect_identical(
    p$scales$scales[[1]]$limits,
    c(-5, 5)
  )
})


#------------------- pmx_plot_abs_iwres_ipred end ----------------------------

#------------------- pmx_plot_iwres_ipred start -------------------------------
test_that("pmx_plot_iwres_ipred: params: controller result: gg, ggplot", {
  expect_true(inherits(pmx_plot_iwres_ipred(ctr = ctr), c("gg", "ggplot")))
})

test_that("pmx_plot_iwres_ipred: params: no result: error", {
  expect_error(pmx_plot_iwres_ipred())
})

test_that(
  "pmx_plot_iwres_ipred: params: not controller result: error",
  {
    ctr <- theophylline() %>% get_data("eta")
    expect_error(pmx_plot_iwres_ipred(ctr = ctr))
  }
)

test_that("pmx_plot_iwres_ipred: params: ctr; result: list", {
  p <- pmx_plot_iwres_ipred(ctr)
  expect_true(inherits(p$scales$scales, "list"))
})

test_that("pmx_plot_iwres_ipred: params: ctr; result: identical structure", {
  p <- pmx_plot_iwres_ipred(ctr)
  expect_identical(
    p$scales$scales[[1]]$limits,
    c(-3.3237, 3.3237)
  )
})

test_that("pmx_plot_iwres_ipred: params: ctr_mlx; result: identical structure", {
  mlxpath <- file.path(
    system.file(package = "ggPMX"),
    "testdata",
    "1_popPK_model",
    "project.mlxtran"
  )
  ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing")
  p <- pmx_plot_iwres_ipred(ctr_mlx)
  expect_identical(
    p$scales$scales[[1]]$limits,
    c(-3.7749, 3.7749)
  )
})


test_that("pmx_plot_iwres_ipred: params: ctr, ylim; result: identical structure", {
  p <- pmx_plot_iwres_ipred(ctr) + ylim(-5, 5)
  expect_identical(
    p$scales$scales[[1]]$limits,
    c(-5, 5)
  )
})


#------------------- pmx_plot_iwres_ipred end --------------------------------

#------------------- pmx_plot_dv_ipred start ---------------------------------

test_that("pmx_plot_dv_ipred: params: ctr; result: ggplot", {
  expect_true(inherits(pmx_plot_dv_ipred(ctr), "ggplot"))
})

test_that("pmx_plot_dv_ipred: params: ctr; result: list", {
  p <- pmx_plot_dv_ipred(ctr)
  expect_true(inherits(p$scales$scales, "list"))
})

test_that("pmx_plot_dv_ipred: params: ctr; result: identical inherist of has_scale", {
  p <- pmx_plot_dv_ipred(ctr)
  expect_true(inherits(p$scales$has_scale, "ggproto_method"))
})

test_that("pmx_plot_dv_ipred: params: ctr_mlx; result: identical scales inherits", {
  mlxpath <- file.path(
    system.file(package = "ggPMX"),
    "testdata",
    "1_popPK_model",
    "project.mlxtran"
  )
  ctr_mlx <- pmx_mlxtran(mlxpath, config = "standing")
  p <- pmx_plot_dv_ipred(ctr_mlx)
  expect_true(inherits(p$scales$scales, "list"))
})


test_that("pmx_plot_dv_ipred: params: ctr, ylim; result: identical structure", {
  p <- pmx_plot_dv_ipred(ctr) + ylim(-5, 5)
  expect_identical(
    p$scales$scales[[1]]$limits,
    c(-5, 5)
  )
})


#------------------- pmx_plot_dv_ipred end ------------------------------------