Nothing
tests/testthat/_snaps/visual.md
In ggseg3d: Interactive 3D Brain Atlas Visualization
dk cortical atlas produces stable mesh layout
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
left inflated 10242 20480 -83 0.0 -108.0 108.0 -72.9 73.0
right inflated 10242 20480 0 81.8 -107.7 107.7 -73.3 73.3
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 36 e4a6ca19 1 FALSE
vertexcolor 36 e4a6ca19 1 FALSE
dk single hemisphere has medial edge at midline
Code
print(widget_summary(lh), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
left inflated 10242 20480 -83 0 -108 108 -72.9 73
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 36 e4a6ca19 1 FALSE
Code
print(widget_summary(rh), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
right inflated 10242 20480 0 81.8 -107.7 107.7 -73.3 73.3
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 36 e4a6ca19 1 FALSE
dk pial surface produces stable mesh layout
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max color_mode
left pial 10242 20480 -70 0 -104.7 68.9 -48.3 78.1 vertexcolor
right pial 10242 20480 0 70 -104.4 69.2 -48.4 79.2 vertexcolor
n_colors color_digest opacity is_flatmap
36 e4a6ca19 1 FALSE
36 e4a6ca19 1 FALSE
aseg subcortical atlas produces stable mesh layout
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
Cerebellum 21232 42456 -53.2 0.7 -68.1 -8.5 -75.4 -13.9
Cerebellum 21232 42456 -53.2 0.7 -68.1 -8.5 -75.4 -13.9
Thalamus 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus Proper 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus Proper 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Caudate 3026 6056 -21.7 -6.7 1.7 49.1 -20.5 11.8
Caudate 3026 6056 -21.7 -6.7 1.7 49.1 -20.5 11.8
Putamen 3994 7984 -36.7 -12.4 2.8 42.4 -26.8 1.1
Putamen 3994 7984 -36.7 -12.4 2.8 42.4 -26.8 1.1
Pallidum 1444 2884 -28.2 -12.3 6.8 30.5 -20.4 -6.9
Pallidum 1444 2884 -28.2 -12.3 6.8 30.5 -20.4 -6.9
Brain Stem 9214 18424 -16.9 17.4 -25.0 10.4 -82.2 -12.4
Hippocampus 3782 7560 -37.7 -12.7 -18.2 17.5 -42.7 -7.5
Hippocampus 3782 7560 -37.7 -12.7 -18.2 17.5 -42.7 -7.5
Amygdala 1418 2832 -33.0 -14.6 10.0 23.5 -42.6 -22.5
Amygdala 1418 2832 -33.0 -14.6 10.0 23.5 -42.6 -22.5
accumbens area 862 1720 -15.2 -5.3 27.0 42.4 -26.6 -14.8
ventraldc 3366 6732 -29.6 1.0 -6.2 25.2 -33.1 -14.1
vessel 152 300 -30.8 -25.2 19.3 24.3 -23.4 -20.8
choroid plexus 1762 3540 -35.9 0.2 -15.1 45.1 -25.2 7.5
Cerebellum 21648 43300 -0.8 53.8 -68.3 -8.4 -75.6 -13.8
Cerebellum 21648 43300 -0.8 53.8 -68.3 -8.4 -75.6 -13.8
Thalamus 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus Proper 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus Proper 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Caudate 3242 6488 5.4 21.8 2.0 48.4 -19.3 13.1
Caudate 3242 6488 5.4 21.8 2.0 48.4 -19.3 13.1
Putamen 3868 7732 12.5 36.0 3.9 42.6 -26.7 1.1
Putamen 3868 7732 12.5 36.0 3.9 42.6 -26.7 1.1
Pallidum 1374 2744 13.4 28.5 7.2 30.3 -19.6 -6.3
Pallidum 1374 2744 13.4 28.5 7.2 30.3 -19.6 -6.3
Hippocampus 3752 7500 14.0 38.6 -18.1 17.1 -42.5 -6.7
Hippocampus 3752 7500 14.0 38.6 -18.1 17.1 -42.5 -6.7
Amygdala 1458 2912 15.1 33.6 10.8 24.1 -43.2 -22.4
Amygdala 1458 2912 15.1 33.6 10.8 24.1 -43.2 -22.4
accumbens area 838 1672 5.2 15.2 26.0 43.5 -25.8 -15.8
ventraldc 3366 6732 1.1 30.9 -6.0 25.5 -32.4 -12.8
vessel 140 276 27.4 32.0 19.4 25.3 -23.4 -20.9
choroid plexus 2370 4704 -0.5 37.7 -14.7 44.9 -25.9 9.4
Optic Chiasm 344 696 -6.5 6.0 22.3 27.2 -33.3 -27.3
cc posterior 1034 2064 -2.8 2.4 -20.1 -1.6 -4.8 14.4
cc mid posterior 624 1240 -2.7 2.1 -2.2 13.9 7.0 17.7
cc central 532 1060 -2.7 2.1 14.0 29.5 9.7 18.0
cc mid anterior 608 1212 -2.7 2.1 29.0 44.5 1.1 14.8
cc anterior 1006 2008 -2.8 2.6 40.0 57.6 -15.0 5.7
color_mode n_colors color_digest opacity is_flatmap
facecolor 1 40605a68 1 FALSE
facecolor 1 40605a68 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 82a2eb8f 1 FALSE
facecolor 1 82a2eb8f 1 FALSE
facecolor 1 c05a8a6d 1 FALSE
facecolor 1 c05a8a6d 1 FALSE
facecolor 1 e2060b29 1 FALSE
facecolor 1 e2060b29 1 FALSE
facecolor 1 5bb108a8 1 FALSE
facecolor 1 b20c29bc 1 FALSE
facecolor 1 b20c29bc 1 FALSE
facecolor 1 45d88deb 1 FALSE
facecolor 1 45d88deb 1 FALSE
facecolor 1 b47f2b74 1 FALSE
facecolor 1 756ab4b2 1 FALSE
facecolor 1 a9b715e7 1 FALSE
facecolor 1 f7cfe829 1 FALSE
facecolor 1 40605a68 1 FALSE
facecolor 1 40605a68 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 82a2eb8f 1 FALSE
facecolor 1 82a2eb8f 1 FALSE
facecolor 1 c05a8a6d 1 FALSE
facecolor 1 c05a8a6d 1 FALSE
facecolor 1 2960ae60 1 FALSE
facecolor 1 2960ae60 1 FALSE
facecolor 1 b20c29bc 1 FALSE
facecolor 1 b20c29bc 1 FALSE
facecolor 1 45d88deb 1 FALSE
facecolor 1 45d88deb 1 FALSE
facecolor 1 b47f2b74 1 FALSE
facecolor 1 756ab4b2 1 FALSE
facecolor 1 a9b715e7 1 FALSE
facecolor 1 64787738 1 FALSE
facecolor 1 5c6e2031 1 FALSE
facecolor 1 36c2395a 1 FALSE
facecolor 1 2ce28dcf 1 FALSE
facecolor 1 5b40b064 1 FALSE
facecolor 1 0f09f440 1 FALSE
facecolor 1 b6b26add 1 FALSE
cerebellar atlas produces stable mesh layout
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max color_mode
cerebellum 30013 57665 -53.6 56 -91.7 0 -64.6 0 vertexcolor
n_colors color_digest opacity is_flatmap
3 8690aed8 1 FALSE
cortical + glassbrain composes as expected
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
glass brain left 10242 20480 -83 0.0 -108.0 108.0 -72.9 73.0
glass brain right 10242 20480 0 81.8 -107.7 107.7 -73.3 73.3
left inflated 10242 20480 -83 0.0 -108.0 108.0 -72.9 73.0
right inflated 10242 20480 0 81.8 -107.7 107.7 -73.3 73.3
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 1 19986245 0.2 FALSE
vertexcolor 1 19986245 0.2 FALSE
vertexcolor 36 e4a6ca19 1.0 FALSE
vertexcolor 36 e4a6ca19 1.0 FALSE
aseg + glassbrain composes as expected
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
glass brain left 10242 20480 -83.0 0.0 -108.0 108.0 -72.9 73.0
glass brain right 10242 20480 0.0 81.8 -107.7 107.7 -73.3 73.3
Cerebellum 21232 42456 -53.2 0.7 -68.1 -8.5 -75.4 -13.9
Cerebellum 21232 42456 -53.2 0.7 -68.1 -8.5 -75.4 -13.9
Thalamus 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus Proper 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus Proper 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Caudate 3026 6056 -21.7 -6.7 1.7 49.1 -20.5 11.8
Caudate 3026 6056 -21.7 -6.7 1.7 49.1 -20.5 11.8
Putamen 3994 7984 -36.7 -12.4 2.8 42.4 -26.8 1.1
Putamen 3994 7984 -36.7 -12.4 2.8 42.4 -26.8 1.1
Pallidum 1444 2884 -28.2 -12.3 6.8 30.5 -20.4 -6.9
Pallidum 1444 2884 -28.2 -12.3 6.8 30.5 -20.4 -6.9
Brain Stem 9214 18424 -16.9 17.4 -25.0 10.4 -82.2 -12.4
Hippocampus 3782 7560 -37.7 -12.7 -18.2 17.5 -42.7 -7.5
Hippocampus 3782 7560 -37.7 -12.7 -18.2 17.5 -42.7 -7.5
Amygdala 1418 2832 -33.0 -14.6 10.0 23.5 -42.6 -22.5
Amygdala 1418 2832 -33.0 -14.6 10.0 23.5 -42.6 -22.5
accumbens area 862 1720 -15.2 -5.3 27.0 42.4 -26.6 -14.8
ventraldc 3366 6732 -29.6 1.0 -6.2 25.2 -33.1 -14.1
vessel 152 300 -30.8 -25.2 19.3 24.3 -23.4 -20.8
choroid plexus 1762 3540 -35.9 0.2 -15.1 45.1 -25.2 7.5
Cerebellum 21648 43300 -0.8 53.8 -68.3 -8.4 -75.6 -13.8
Cerebellum 21648 43300 -0.8 53.8 -68.3 -8.4 -75.6 -13.8
Thalamus 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus Proper 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus Proper 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Caudate 3242 6488 5.4 21.8 2.0 48.4 -19.3 13.1
Caudate 3242 6488 5.4 21.8 2.0 48.4 -19.3 13.1
Putamen 3868 7732 12.5 36.0 3.9 42.6 -26.7 1.1
Putamen 3868 7732 12.5 36.0 3.9 42.6 -26.7 1.1
Pallidum 1374 2744 13.4 28.5 7.2 30.3 -19.6 -6.3
Pallidum 1374 2744 13.4 28.5 7.2 30.3 -19.6 -6.3
Hippocampus 3752 7500 14.0 38.6 -18.1 17.1 -42.5 -6.7
Hippocampus 3752 7500 14.0 38.6 -18.1 17.1 -42.5 -6.7
Amygdala 1458 2912 15.1 33.6 10.8 24.1 -43.2 -22.4
Amygdala 1458 2912 15.1 33.6 10.8 24.1 -43.2 -22.4
accumbens area 838 1672 5.2 15.2 26.0 43.5 -25.8 -15.8
ventraldc 3366 6732 1.1 30.9 -6.0 25.5 -32.4 -12.8
vessel 140 276 27.4 32.0 19.4 25.3 -23.4 -20.9
choroid plexus 2370 4704 -0.5 37.7 -14.7 44.9 -25.9 9.4
Optic Chiasm 344 696 -6.5 6.0 22.3 27.2 -33.3 -27.3
cc posterior 1034 2064 -2.8 2.4 -20.1 -1.6 -4.8 14.4
cc mid posterior 624 1240 -2.7 2.1 -2.2 13.9 7.0 17.7
cc central 532 1060 -2.7 2.1 14.0 29.5 9.7 18.0
cc mid anterior 608 1212 -2.7 2.1 29.0 44.5 1.1 14.8
cc anterior 1006 2008 -2.8 2.6 40.0 57.6 -15.0 5.7
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 1 19986245 0.15 FALSE
vertexcolor 1 19986245 0.15 FALSE
facecolor 1 40605a68 1.00 FALSE
facecolor 1 40605a68 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 82a2eb8f 1.00 FALSE
facecolor 1 82a2eb8f 1.00 FALSE
facecolor 1 c05a8a6d 1.00 FALSE
facecolor 1 c05a8a6d 1.00 FALSE
facecolor 1 e2060b29 1.00 FALSE
facecolor 1 e2060b29 1.00 FALSE
facecolor 1 5bb108a8 1.00 FALSE
facecolor 1 b20c29bc 1.00 FALSE
facecolor 1 b20c29bc 1.00 FALSE
facecolor 1 45d88deb 1.00 FALSE
facecolor 1 45d88deb 1.00 FALSE
facecolor 1 b47f2b74 1.00 FALSE
facecolor 1 756ab4b2 1.00 FALSE
facecolor 1 a9b715e7 1.00 FALSE
facecolor 1 f7cfe829 1.00 FALSE
facecolor 1 40605a68 1.00 FALSE
facecolor 1 40605a68 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 82a2eb8f 1.00 FALSE
facecolor 1 82a2eb8f 1.00 FALSE
facecolor 1 c05a8a6d 1.00 FALSE
facecolor 1 c05a8a6d 1.00 FALSE
facecolor 1 2960ae60 1.00 FALSE
facecolor 1 2960ae60 1.00 FALSE
facecolor 1 b20c29bc 1.00 FALSE
facecolor 1 b20c29bc 1.00 FALSE
facecolor 1 45d88deb 1.00 FALSE
facecolor 1 45d88deb 1.00 FALSE
facecolor 1 b47f2b74 1.00 FALSE
facecolor 1 756ab4b2 1.00 FALSE
facecolor 1 a9b715e7 1.00 FALSE
facecolor 1 64787738 1.00 FALSE
facecolor 1 5c6e2031 1.00 FALSE
facecolor 1 36c2395a 1.00 FALSE
facecolor 1 2ce28dcf 1.00 FALSE
facecolor 1 5b40b064 1.00 FALSE
facecolor 1 0f09f440 1.00 FALSE
facecolor 1 b6b26add 1.00 FALSE
cerebellar + glassbrain composes as expected
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
glass brain left 10242 20480 -83.0 0.0 -108.0 108.0 -72.9 73.0
glass brain right 10242 20480 0.0 81.8 -107.7 107.7 -73.3 73.3
cerebellum 30013 57665 -53.6 56.0 -91.7 0.0 -64.6 0.0
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 1 19986245 0.15 FALSE
vertexcolor 1 19986245 0.15 FALSE
vertexcolor 3 8690aed8 1.00 FALSE
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dk cortical atlas produces stable mesh layout
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
left inflated 10242 20480 -83 0.0 -108.0 108.0 -72.9 73.0
right inflated 10242 20480 0 81.8 -107.7 107.7 -73.3 73.3
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 36 e4a6ca19 1 FALSE
vertexcolor 36 e4a6ca19 1 FALSE
dk single hemisphere has medial edge at midline
Code
print(widget_summary(lh), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
left inflated 10242 20480 -83 0 -108 108 -72.9 73
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 36 e4a6ca19 1 FALSE
Code
print(widget_summary(rh), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
right inflated 10242 20480 0 81.8 -107.7 107.7 -73.3 73.3
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 36 e4a6ca19 1 FALSE
dk pial surface produces stable mesh layout
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max color_mode
left pial 10242 20480 -70 0 -104.7 68.9 -48.3 78.1 vertexcolor
right pial 10242 20480 0 70 -104.4 69.2 -48.4 79.2 vertexcolor
n_colors color_digest opacity is_flatmap
36 e4a6ca19 1 FALSE
36 e4a6ca19 1 FALSE
aseg subcortical atlas produces stable mesh layout
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
Cerebellum 21232 42456 -53.2 0.7 -68.1 -8.5 -75.4 -13.9
Cerebellum 21232 42456 -53.2 0.7 -68.1 -8.5 -75.4 -13.9
Thalamus 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus Proper 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus Proper 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Caudate 3026 6056 -21.7 -6.7 1.7 49.1 -20.5 11.8
Caudate 3026 6056 -21.7 -6.7 1.7 49.1 -20.5 11.8
Putamen 3994 7984 -36.7 -12.4 2.8 42.4 -26.8 1.1
Putamen 3994 7984 -36.7 -12.4 2.8 42.4 -26.8 1.1
Pallidum 1444 2884 -28.2 -12.3 6.8 30.5 -20.4 -6.9
Pallidum 1444 2884 -28.2 -12.3 6.8 30.5 -20.4 -6.9
Brain Stem 9214 18424 -16.9 17.4 -25.0 10.4 -82.2 -12.4
Hippocampus 3782 7560 -37.7 -12.7 -18.2 17.5 -42.7 -7.5
Hippocampus 3782 7560 -37.7 -12.7 -18.2 17.5 -42.7 -7.5
Amygdala 1418 2832 -33.0 -14.6 10.0 23.5 -42.6 -22.5
Amygdala 1418 2832 -33.0 -14.6 10.0 23.5 -42.6 -22.5
accumbens area 862 1720 -15.2 -5.3 27.0 42.4 -26.6 -14.8
ventraldc 3366 6732 -29.6 1.0 -6.2 25.2 -33.1 -14.1
vessel 152 300 -30.8 -25.2 19.3 24.3 -23.4 -20.8
choroid plexus 1762 3540 -35.9 0.2 -15.1 45.1 -25.2 7.5
Cerebellum 21648 43300 -0.8 53.8 -68.3 -8.4 -75.6 -13.8
Cerebellum 21648 43300 -0.8 53.8 -68.3 -8.4 -75.6 -13.8
Thalamus 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus Proper 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus Proper 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Caudate 3242 6488 5.4 21.8 2.0 48.4 -19.3 13.1
Caudate 3242 6488 5.4 21.8 2.0 48.4 -19.3 13.1
Putamen 3868 7732 12.5 36.0 3.9 42.6 -26.7 1.1
Putamen 3868 7732 12.5 36.0 3.9 42.6 -26.7 1.1
Pallidum 1374 2744 13.4 28.5 7.2 30.3 -19.6 -6.3
Pallidum 1374 2744 13.4 28.5 7.2 30.3 -19.6 -6.3
Hippocampus 3752 7500 14.0 38.6 -18.1 17.1 -42.5 -6.7
Hippocampus 3752 7500 14.0 38.6 -18.1 17.1 -42.5 -6.7
Amygdala 1458 2912 15.1 33.6 10.8 24.1 -43.2 -22.4
Amygdala 1458 2912 15.1 33.6 10.8 24.1 -43.2 -22.4
accumbens area 838 1672 5.2 15.2 26.0 43.5 -25.8 -15.8
ventraldc 3366 6732 1.1 30.9 -6.0 25.5 -32.4 -12.8
vessel 140 276 27.4 32.0 19.4 25.3 -23.4 -20.9
choroid plexus 2370 4704 -0.5 37.7 -14.7 44.9 -25.9 9.4
Optic Chiasm 344 696 -6.5 6.0 22.3 27.2 -33.3 -27.3
cc posterior 1034 2064 -2.8 2.4 -20.1 -1.6 -4.8 14.4
cc mid posterior 624 1240 -2.7 2.1 -2.2 13.9 7.0 17.7
cc central 532 1060 -2.7 2.1 14.0 29.5 9.7 18.0
cc mid anterior 608 1212 -2.7 2.1 29.0 44.5 1.1 14.8
cc anterior 1006 2008 -2.8 2.6 40.0 57.6 -15.0 5.7
color_mode n_colors color_digest opacity is_flatmap
facecolor 1 40605a68 1 FALSE
facecolor 1 40605a68 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 82a2eb8f 1 FALSE
facecolor 1 82a2eb8f 1 FALSE
facecolor 1 c05a8a6d 1 FALSE
facecolor 1 c05a8a6d 1 FALSE
facecolor 1 e2060b29 1 FALSE
facecolor 1 e2060b29 1 FALSE
facecolor 1 5bb108a8 1 FALSE
facecolor 1 b20c29bc 1 FALSE
facecolor 1 b20c29bc 1 FALSE
facecolor 1 45d88deb 1 FALSE
facecolor 1 45d88deb 1 FALSE
facecolor 1 b47f2b74 1 FALSE
facecolor 1 756ab4b2 1 FALSE
facecolor 1 a9b715e7 1 FALSE
facecolor 1 f7cfe829 1 FALSE
facecolor 1 40605a68 1 FALSE
facecolor 1 40605a68 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 fa9a06b0 1 FALSE
facecolor 1 82a2eb8f 1 FALSE
facecolor 1 82a2eb8f 1 FALSE
facecolor 1 c05a8a6d 1 FALSE
facecolor 1 c05a8a6d 1 FALSE
facecolor 1 2960ae60 1 FALSE
facecolor 1 2960ae60 1 FALSE
facecolor 1 b20c29bc 1 FALSE
facecolor 1 b20c29bc 1 FALSE
facecolor 1 45d88deb 1 FALSE
facecolor 1 45d88deb 1 FALSE
facecolor 1 b47f2b74 1 FALSE
facecolor 1 756ab4b2 1 FALSE
facecolor 1 a9b715e7 1 FALSE
facecolor 1 64787738 1 FALSE
facecolor 1 5c6e2031 1 FALSE
facecolor 1 36c2395a 1 FALSE
facecolor 1 2ce28dcf 1 FALSE
facecolor 1 5b40b064 1 FALSE
facecolor 1 0f09f440 1 FALSE
facecolor 1 b6b26add 1 FALSE
cerebellar atlas produces stable mesh layout
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max color_mode
cerebellum 30013 57665 -53.6 56 -91.7 0 -64.6 0 vertexcolor
n_colors color_digest opacity is_flatmap
3 8690aed8 1 FALSE
cortical + glassbrain composes as expected
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
glass brain left 10242 20480 -83 0.0 -108.0 108.0 -72.9 73.0
glass brain right 10242 20480 0 81.8 -107.7 107.7 -73.3 73.3
left inflated 10242 20480 -83 0.0 -108.0 108.0 -72.9 73.0
right inflated 10242 20480 0 81.8 -107.7 107.7 -73.3 73.3
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 1 19986245 0.2 FALSE
vertexcolor 1 19986245 0.2 FALSE
vertexcolor 36 e4a6ca19 1.0 FALSE
vertexcolor 36 e4a6ca19 1.0 FALSE
aseg + glassbrain composes as expected
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
glass brain left 10242 20480 -83.0 0.0 -108.0 108.0 -72.9 73.0
glass brain right 10242 20480 0.0 81.8 -107.7 107.7 -73.3 73.3
Cerebellum 21232 42456 -53.2 0.7 -68.1 -8.5 -75.4 -13.9
Cerebellum 21232 42456 -53.2 0.7 -68.1 -8.5 -75.4 -13.9
Thalamus 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus Proper 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Thalamus Proper 3726 7448 -26.7 -0.6 -12.1 22.5 -18.3 5.2
Caudate 3026 6056 -21.7 -6.7 1.7 49.1 -20.5 11.8
Caudate 3026 6056 -21.7 -6.7 1.7 49.1 -20.5 11.8
Putamen 3994 7984 -36.7 -12.4 2.8 42.4 -26.8 1.1
Putamen 3994 7984 -36.7 -12.4 2.8 42.4 -26.8 1.1
Pallidum 1444 2884 -28.2 -12.3 6.8 30.5 -20.4 -6.9
Pallidum 1444 2884 -28.2 -12.3 6.8 30.5 -20.4 -6.9
Brain Stem 9214 18424 -16.9 17.4 -25.0 10.4 -82.2 -12.4
Hippocampus 3782 7560 -37.7 -12.7 -18.2 17.5 -42.7 -7.5
Hippocampus 3782 7560 -37.7 -12.7 -18.2 17.5 -42.7 -7.5
Amygdala 1418 2832 -33.0 -14.6 10.0 23.5 -42.6 -22.5
Amygdala 1418 2832 -33.0 -14.6 10.0 23.5 -42.6 -22.5
accumbens area 862 1720 -15.2 -5.3 27.0 42.4 -26.6 -14.8
ventraldc 3366 6732 -29.6 1.0 -6.2 25.2 -33.1 -14.1
vessel 152 300 -30.8 -25.2 19.3 24.3 -23.4 -20.8
choroid plexus 1762 3540 -35.9 0.2 -15.1 45.1 -25.2 7.5
Cerebellum 21648 43300 -0.8 53.8 -68.3 -8.4 -75.6 -13.8
Cerebellum 21648 43300 -0.8 53.8 -68.3 -8.4 -75.6 -13.8
Thalamus 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus Proper 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Thalamus Proper 3704 7404 0.7 25.4 -12.0 23.5 -17.2 5.6
Caudate 3242 6488 5.4 21.8 2.0 48.4 -19.3 13.1
Caudate 3242 6488 5.4 21.8 2.0 48.4 -19.3 13.1
Putamen 3868 7732 12.5 36.0 3.9 42.6 -26.7 1.1
Putamen 3868 7732 12.5 36.0 3.9 42.6 -26.7 1.1
Pallidum 1374 2744 13.4 28.5 7.2 30.3 -19.6 -6.3
Pallidum 1374 2744 13.4 28.5 7.2 30.3 -19.6 -6.3
Hippocampus 3752 7500 14.0 38.6 -18.1 17.1 -42.5 -6.7
Hippocampus 3752 7500 14.0 38.6 -18.1 17.1 -42.5 -6.7
Amygdala 1458 2912 15.1 33.6 10.8 24.1 -43.2 -22.4
Amygdala 1458 2912 15.1 33.6 10.8 24.1 -43.2 -22.4
accumbens area 838 1672 5.2 15.2 26.0 43.5 -25.8 -15.8
ventraldc 3366 6732 1.1 30.9 -6.0 25.5 -32.4 -12.8
vessel 140 276 27.4 32.0 19.4 25.3 -23.4 -20.9
choroid plexus 2370 4704 -0.5 37.7 -14.7 44.9 -25.9 9.4
Optic Chiasm 344 696 -6.5 6.0 22.3 27.2 -33.3 -27.3
cc posterior 1034 2064 -2.8 2.4 -20.1 -1.6 -4.8 14.4
cc mid posterior 624 1240 -2.7 2.1 -2.2 13.9 7.0 17.7
cc central 532 1060 -2.7 2.1 14.0 29.5 9.7 18.0
cc mid anterior 608 1212 -2.7 2.1 29.0 44.5 1.1 14.8
cc anterior 1006 2008 -2.8 2.6 40.0 57.6 -15.0 5.7
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 1 19986245 0.15 FALSE
vertexcolor 1 19986245 0.15 FALSE
facecolor 1 40605a68 1.00 FALSE
facecolor 1 40605a68 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 82a2eb8f 1.00 FALSE
facecolor 1 82a2eb8f 1.00 FALSE
facecolor 1 c05a8a6d 1.00 FALSE
facecolor 1 c05a8a6d 1.00 FALSE
facecolor 1 e2060b29 1.00 FALSE
facecolor 1 e2060b29 1.00 FALSE
facecolor 1 5bb108a8 1.00 FALSE
facecolor 1 b20c29bc 1.00 FALSE
facecolor 1 b20c29bc 1.00 FALSE
facecolor 1 45d88deb 1.00 FALSE
facecolor 1 45d88deb 1.00 FALSE
facecolor 1 b47f2b74 1.00 FALSE
facecolor 1 756ab4b2 1.00 FALSE
facecolor 1 a9b715e7 1.00 FALSE
facecolor 1 f7cfe829 1.00 FALSE
facecolor 1 40605a68 1.00 FALSE
facecolor 1 40605a68 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 fa9a06b0 1.00 FALSE
facecolor 1 82a2eb8f 1.00 FALSE
facecolor 1 82a2eb8f 1.00 FALSE
facecolor 1 c05a8a6d 1.00 FALSE
facecolor 1 c05a8a6d 1.00 FALSE
facecolor 1 2960ae60 1.00 FALSE
facecolor 1 2960ae60 1.00 FALSE
facecolor 1 b20c29bc 1.00 FALSE
facecolor 1 b20c29bc 1.00 FALSE
facecolor 1 45d88deb 1.00 FALSE
facecolor 1 45d88deb 1.00 FALSE
facecolor 1 b47f2b74 1.00 FALSE
facecolor 1 756ab4b2 1.00 FALSE
facecolor 1 a9b715e7 1.00 FALSE
facecolor 1 64787738 1.00 FALSE
facecolor 1 5c6e2031 1.00 FALSE
facecolor 1 36c2395a 1.00 FALSE
facecolor 1 2ce28dcf 1.00 FALSE
facecolor 1 5b40b064 1.00 FALSE
facecolor 1 0f09f440 1.00 FALSE
facecolor 1 b6b26add 1.00 FALSE
cerebellar + glassbrain composes as expected
Code
print(widget_summary(p), row.names = FALSE)
Output
name n_vertices n_faces x_min x_max y_min y_max z_min z_max
glass brain left 10242 20480 -83.0 0.0 -108.0 108.0 -72.9 73.0
glass brain right 10242 20480 0.0 81.8 -107.7 107.7 -73.3 73.3
cerebellum 30013 57665 -53.6 56.0 -91.7 0.0 -64.6 0.0
color_mode n_colors color_digest opacity is_flatmap
vertexcolor 1 19986245 0.15 FALSE
vertexcolor 1 19986245 0.15 FALSE
vertexcolor 3 8690aed8 1.00 FALSE
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