glmgraph: Graph-Constrained Regularization for Sparse Generalized Linear Models

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We propose to use sparse regression model to achieve variable selection while accounting for graph-constraints among coefficients. Different linear combination of a sparsity penalty(L1) and a smoothness(MCP) penalty has been used, which induces both sparsity of the solution and certain smoothness on the linear coefficients.

Author
Li Chen, Jun Chen
Date of publication
2015-07-19 09:52:47
Maintainer
Li Chen <li.chen@emory.edu>
License
GPL-2
Version
1.0.3

View on CRAN

Man pages

coef.cv.glmgraph
Retrieve coefficients from a fitted "cv.glmgraph" object.
coef.glmgraph
Retrieve coefficients from a fitted "glmgraph" object.
cv.glmgraph
Cross-validation for glmgraph
glmgraph
Fit a GLM with a combination of sparse and smooth...
glmgraph-package
Fit a GLM with a combination of sparse and smooth...
plot.cv.glmgraph
Plot the cross-validation curve produced by cv.glmgraph
plot.glmgraph
Plot coefficients from a "glmgraph" object
predict.cv.glmgraph
make prediction from a fitted "cv.glmgraph" object.
predict.glmgraph
Model predictions based on a fitted "glmgraph" object.
print.cv.glmgraph
print a glmgraph object

Files in this package

glmgraph
glmgraph/src
glmgraph/src/binomial_utils.h
glmgraph/src/utils.c
glmgraph/src/binomial.cpp
glmgraph/src/gaussian_utils.h
glmgraph/src/binomial_utils.cpp
glmgraph/src/gaussian_utils.cpp
glmgraph/src/Makevars.win
glmgraph/src/gaussian.cpp
glmgraph/NAMESPACE
glmgraph/R
glmgraph/R/coef.glmgraph.R
glmgraph/R/predict.glmgraph.R
glmgraph/R/print.cv.glmgraph.R
glmgraph/R/coef.cv.glmgraph.R
glmgraph/R/plot.R
glmgraph/R/unstandardize.R
glmgraph/R/cv.glmgraph.R
glmgraph/R/plot.cv.R
glmgraph/R/standardize.R
glmgraph/R/predict.cv.glmgraph.R
glmgraph/R/setuplambda.R
glmgraph/R/glmgraph.R
glmgraph/R/setcriteria.R
glmgraph/MD5
glmgraph/DESCRIPTION
glmgraph/man
glmgraph/man/predict.cv.glmgraph.Rd
glmgraph/man/plot.glmgraph.Rd
glmgraph/man/plot.cv.glmgraph.Rd
glmgraph/man/glmgraph-package.Rd
glmgraph/man/print.cv.glmgraph.Rd
glmgraph/man/glmgraph.Rd
glmgraph/man/coef.cv.glmgraph.Rd
glmgraph/man/predict.glmgraph.Rd
glmgraph/man/coef.glmgraph.Rd
glmgraph/man/cv.glmgraph.Rd