Files in glmnet

Lasso and Elastic-Net Regularized Generalized Linear Models

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/zeromat.R R/jerr.R R/coxnet.R R/jerr.lognet.R R/fishnet.R R/cv.relaxed.raw.R R/cvtype.R R/cv.glmnetfit.R R/cv.elnet.R R/deviance.glmnet.R R/predict.fishnet.R R/predict.lognet.R R/predict.relaxed.R R/plot.cv.glmnet.R R/cvcompute.R R/cv.glmnet.raw.R R/jerr.coxnet.R R/roc.glmnet.R R/cv.lognet.R R/check.dots.R R/na.mean.R R/print.cv.glmnet.R R/glmnet.measures.R R/predict.cv.relaxed.R R/predict.coxnet.R R/auc.R R/auc.mat.R R/cv.coxnet.R R/coef.relaxed.R R/response.coxnet.R R/fix.lam.R R/assess.glmnet.R R/glmnet_softmax.R R/getOptcv.relaxed.R R/plot.mrelnet.R R/plot.glmnet.R R/data.R R/predict.cv.glmnet.R R/print.cv.relaxed.R R/glmnet.R R/glmnet-package.R R/stratifySurv.R R/cv.multnet.R R/cvstats.R R/relax.glmnet.R R/glmnetFlex.R R/onAttach.R R/coef.cv.glmnet.R R/coef.cv.relaxed.R R/makeX.R R/coxgrad.R R/cv.fishnet.R R/pb.R R/predict.mrelnet.R R/print.bigGlm.R R/error.bars.R R/lognet.R R/nonzeroCoef.R R/buildPredmat.coxnetlist.R R/print.glmnet.R R/plot.cv.relaxed.R R/cv.glmnet.R R/coef.glmnet.R R/jerr.mrelnet.R R/print.confusion.table.R R/cv.mrelnet.R R/buildPredmat.default.R R/buildPredmat.array.R R/glmnet.control.R R/lambda.interp.R R/bigGlm.R R/confusion.glmnet.R R/jerr.elnet.R R/survfit.cv.glmnet.R R/blend.relaxed.R R/predict.multnet.R R/coefnorm.R R/plotCoef.R R/coxpath.R R/plot.relaxed.R R/coxnet.deviance.R R/check.exclude.R R/elnet.R R/rmult.R R/Cindex.R R/survfit.coxnet.R R/assess.coxnet.R R/getOptcv.glmnet.R R/jerr.fishnet.R R/mrelnet.R R/family.glmnet.R R/predict.elnet.R R/plot.multnet.R R/getcoef.multinomial.R R/predict.glmnet.R R/getcoef.R

src/Makevars

src/coxnet5dpclean.f

src/RcppExports.cpp

src/glmnet_init.cpp

src/internal.cpp

src/pb.c

src/elnet_exp.cpp

src/driver.h

src/internal.h

src/wls_exp.cpp

src/pb_exp.cpp

src/glmnetpp/generate_bazelrc

src/glmnetpp/README.md

src/glmnetpp/BUILD.bazel

src/glmnetpp/WORKSPACE

src/glmnetpp/environment.yml

src/glmnetpp/CMakeLists.txt

src/glmnetpp/include/glmnetpp

src/glmnetpp/include/glmnetpp_bits/elnet_point.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_driver.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_poisson_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/poisson_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_gaussian_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/gaussian_cov.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_binomial_multi_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_gaussian_multi.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/gaussian_base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/binomial_multi_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/binomial_multi_class_group.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_binomial_multi_class_group.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/gaussian_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/poisson_base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/gaussian_multi.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_gaussian_cov.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/sp_binomial_two_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/binomial_two_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/decl.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/binomial_base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_path/base.hpp

src/glmnetpp/include/glmnetpp_bits/util/functional.hpp

src/glmnetpp/include/glmnetpp_bits/util/exceptions.hpp

src/glmnetpp/include/glmnetpp_bits/util/types.hpp

src/glmnetpp/include/glmnetpp_bits/util/type_traits.hpp

src/glmnetpp/include/glmnetpp_bits/util/macros.hpp

src/glmnetpp/include/glmnetpp_bits/util/iterator/one_to_zero_iterator.hpp

src/glmnetpp/include/glmnetpp_bits/util/iterator/counting_iterator.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_driver/poisson.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_driver/gaussian.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_driver/standardize.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_driver/decl.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_driver/base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_driver/chkvars.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_driver/binomial.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/sp_poisson_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/traits.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/poisson_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/sp_gaussian_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_cov.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/sp_binomial_multi_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_wls.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/sp_gaussian_multi.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/binomial_multi_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/binomial_multi_class_group.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/sp_binomial_multi_class_group.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/sp_gaussian_wls.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/poisson_base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/gaussian_multi.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/sp_gaussian_cov.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/sp_binomial_two_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/binomial_two_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/decl.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/binomial_base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/sp_poisson_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/poisson_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/sp_gaussian_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/gaussian_cov.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/sp_binomial_multi_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/gaussian_wls.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/sp_gaussian_multi.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/gaussian_base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/binomial_multi_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/binomial_multi_class_group.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/sp_binomial_multi_class_group.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/gaussian_naive.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/sp_gaussian_wls.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/poisson_base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/gaussian_multi.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/sp_gaussian_cov.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/sp_binomial_two_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/binomial_two_class.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/decl.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/binomial_base.hpp

src/glmnetpp/include/glmnetpp_bits/elnet_point/internal/base.hpp

src/glmnetpp/src/BUILD.bazel

src/glmnetpp/src/legacy/glmnet5dpclean.f

src/glmnetpp/src/legacy/pb.c

src/glmnetpp/src/legacy/wls.f

src/glmnetpp/src/legacy/legacy.h

src/glmnetpp/test/BUILD.bazel

src/glmnetpp/test/elnet_path/sp_gaussian_cov_unittest.cpp

src/glmnetpp/test/elnet_path/sp_binomial_multi_class_unittest.cpp

src/glmnetpp/test/elnet_path/binomial_multi_class_unittest.cpp

src/glmnetpp/test/elnet_path/binomial_multi_class_group_unittest.cpp

src/glmnetpp/test/elnet_path/binomial_two_class_unittest.cpp

src/glmnetpp/test/elnet_path/gaussian_multi_unittest.cpp

src/glmnetpp/test/elnet_path/sp_poisson_naive_unittest.cpp

src/glmnetpp/test/elnet_path/gaussian_base.hpp

src/glmnetpp/test/elnet_path/gaussian_cov_unittest.cpp

src/glmnetpp/test/elnet_path/poisson_naive_unittest.cpp

src/glmnetpp/test/elnet_path/sp_binomial_two_class_unittest.cpp

src/glmnetpp/test/elnet_path/sp_binomial_multi_class_group_unittest.cpp

src/glmnetpp/test/elnet_path/binomial_base.hpp

src/glmnetpp/test/elnet_path/gaussian_naive_unittest.cpp

src/glmnetpp/test/elnet_path/sp_gaussian_naive_unittest.cpp

src/glmnetpp/test/elnet_path/sp_gaussian_multi_unittest.cpp

src/glmnetpp/test/util/type_traits_unittest.cpp

src/glmnetpp/test/elnet_driver/chkvars_unittest.cpp

src/glmnetpp/test/elnet_driver/gaussian_unittest.cpp

src/glmnetpp/test/elnet_driver/poisson_unittest.cpp

src/glmnetpp/test/elnet_driver/binomial_unittest.cpp

src/glmnetpp/test/elnet_driver/standardize_unittest.cpp

src/glmnetpp/test/testutil/base_fixture.hpp

src/glmnetpp/test/testutil/data_util.hpp

src/glmnetpp/test/testutil/internal.cpp

src/glmnetpp/test/testutil/internal.hpp

src/glmnetpp/test/testutil/mock_pb.hpp

src/glmnetpp/test/testutil/mapped_sparse_matrix_wrapper.hpp

src/glmnetpp/test/testutil/thread.hpp

src/glmnetpp/test/testutil/translation/lognet2n.hpp

src/glmnetpp/test/testutil/translation/multlognetn.hpp

src/glmnetpp/test/testutil/translation/multelnet2.hpp

src/glmnetpp/test/testutil/translation/spelnet2.hpp

src/glmnetpp/test/testutil/translation/multelnet.hpp

src/glmnetpp/test/testutil/translation/fishnet.hpp

src/glmnetpp/test/testutil/translation/elnet2.hpp

src/glmnetpp/test/testutil/translation/wls.hpp

src/glmnetpp/test/testutil/translation/multsplognetn.hpp

src/glmnetpp/test/testutil/translation/fishnet1.hpp

src/glmnetpp/test/testutil/translation/elnet.hpp

src/glmnetpp/test/testutil/translation/lognet.hpp

src/glmnetpp/test/testutil/translation/spelnet1.hpp

src/glmnetpp/test/testutil/translation/elnet1.hpp

src/glmnetpp/test/testutil/translation/splognet.hpp

src/glmnetpp/test/testutil/translation/spelnet.hpp

src/glmnetpp/test/testutil/translation/splognet2n.hpp

src/glmnetpp/test/testutil/translation/multspelnet.hpp

src/glmnetpp/test/testutil/translation/spfishnet.hpp

src/glmnetpp/test/testutil/translation/spfishnet1.hpp

src/glmnetpp/test/testutil/translation/multspelnet2.hpp

src/glmnetpp/test/testutil/translation/splognetn.hpp

src/glmnetpp/test/testutil/translation/lognetn.hpp

src/glmnetpp/test/translation/fishnet_dscheck_unittest.cpp

src/glmnetpp/test/translation/lognet_dscheck_unittest.cpp

src/glmnetpp/test/translation/splognet2n_unittest.cpp

src/glmnetpp/test/translation/multelnet_dscheck_unittest.cpp

src/glmnetpp/test/translation/multlognetn_unittest.cpp

src/glmnetpp/test/translation/elnet_dscheck_unittest.cpp

src/glmnetpp/test/translation/elnet_base_fixture.hpp

src/glmnetpp/test/translation/multelnet2_unittest.cpp

src/glmnetpp/test/translation/lognet2n_unittest.cpp

src/glmnetpp/test/translation/elnet2_unittest.cpp

src/glmnetpp/test/translation/elnet1_unittest.cpp

src/glmnetpp/test/translation/splognetn_unittest.cpp

src/glmnetpp/test/translation/splognet_unittest.cpp

src/glmnetpp/test/translation/lognet_base_fixture.hpp

src/glmnetpp/test/translation/multelnet_unittest.cpp

src/glmnetpp/test/translation/multspelnet_unittest.cpp

src/glmnetpp/test/translation/multspelnet2_unittest.cpp

src/glmnetpp/test/translation/elnet_unittest.cpp

src/glmnetpp/test/translation/wls_unittest.cpp

src/glmnetpp/test/translation/wls_dscheck_unittest.cpp

src/glmnetpp/test/translation/fishnet_unittest.cpp

src/glmnetpp/test/translation/spfishnet1_unittest.cpp

src/glmnetpp/test/translation/spfishnet_unittest.cpp

src/glmnetpp/test/translation/fishnet1_unittest.cpp

src/glmnetpp/test/translation/spelnet1_unittest.cpp

src/glmnetpp/test/translation/spelnet2_unittest.cpp

src/glmnetpp/test/translation/multsplognetn_unittest.cpp

src/glmnetpp/test/translation/lognet_unittest.cpp

src/glmnetpp/test/translation/lognetn_unittest.cpp

src/glmnetpp/test/translation/spelnet_unittest.cpp

src/glmnetpp/test/elnet_point/gaussian_wls_unittest.cpp

src/glmnetpp/test/elnet_point/sp_gaussian_wls_unittest.cpp

src/glmnetpp/docs/design/README.md

src/glmnetpp/docs/data/binomial_two_class_benchmark.csv

src/glmnetpp/docs/data/gaussian_benchmark.csv

src/glmnetpp/docs/data/binomial_benchmark.csv

src/glmnetpp/docs/figs/binomial_two_class_benchmark_fig.png

src/glmnetpp/docs/figs/binomial_benchmark_fig.png

src/glmnetpp/docs/figs/gaussian_benchmark_fig.png

src/glmnetpp/benchmark/gaussian_cov_benchmark.cpp

src/glmnetpp/benchmark/poisson_benchmark.cpp

src/glmnetpp/benchmark/gaussian_naive_benchmark.cpp

src/glmnetpp/benchmark/BUILD.bazel

src/glmnetpp/benchmark/gaussian_benchmark.cpp

src/glmnetpp/benchmark/binomial_two_class_benchmark.cpp

src/glmnetpp/benchmark/binomial_benchmark.cpp

src/glmnetpp/benchmark/analyze/analyze.py

src/glmnetpp/benchmark/analyze/analyze_binomial_two_class_benchmark.py

src/glmnetpp/benchmark/analyze/analyze_binomial_benchmark.py

src/glmnetpp/benchmark/analyze/path_names.py

src/glmnetpp/benchmark/analyze/analyze_gaussian_benchmark.py

src/glmnetpp/bug_reports/2022_11_07.cpp

src/glmnetpp/bug_reports/BUILD.bazel

src/glmnetpp/bug_reports/data/BUILD.bazel

src/glmnetpp/bug_reports/data/2022_11_07/generate_data.R

src/glmnetpp/bug_reports/tools/bazel_data_util.hpp

src/glmnetpp/bug_reports/tools/bazel_data_util.cpp

inst/CITATION

inst/doc/glmnet.pdf inst/doc/relax.Rmd inst/doc/Coxnet.pdf inst/doc/glmnet.Rmd inst/doc/Coxnet.Rmd inst/doc/glmnet.R inst/doc/glmnetFamily.R inst/doc/glmnetFamily.Rmd inst/doc/relax.pdf inst/doc/relax.R inst/doc/Coxnet.R inst/doc/glmnetFamily.pdf inst/testscripts/save_results.R inst/mortran/README.Rmd

inst/mortran/coxnet5dpclean.m

build/vignette.rds

build/partial.rdb

vignettes/relax.Rmd vignettes/glmnet.Rmd vignettes/Coxnet.Rmd vignettes/glmnetFamily.Rmd

vignettes/assets/coxnet.RDS

vignettes/assets/vignette_gaussian.png

vignettes/assets/vignette_binomial.png

vignettes/assets/glmnet_refs.bib

data/PoissonExample.rda

data/CoxExample.rda

data/MultiGaussianExample.rda

data/SparseExample.rda

data/QuickStartExample.rda

data/BinomialExample.rda

data/CVXResults.RData

data/MultinomialExample.rda

man/makeX.Rd man/glmnet.path.Rd man/response.coxnet.Rd man/BinomialExample.Rd man/Cindex.Rd man/stratifySurv.Rd man/fid.Rd man/cox.path.Rd man/CoxExample.Rd man/beta_CVX.Rd man/survfit.cv.glmnet.Rd man/assess.glmnet.Rd man/predict.cv.glmnet.Rd man/QuickStartExample.Rd man/MultinomialExample.Rd man/cox.fit.Rd man/glmnet.fit.Rd man/coxgrad.Rd man/rmult.Rd man/plot.cv.glmnet.Rd man/predict.glmnetfit.Rd man/plot.glmnet.Rd man/deviance.glmnet.Rd man/obj_function.Rd man/print.cv.glmnet.Rd man/mycoxpred.Rd man/survfit.coxnet.Rd man/use.cox.path.Rd man/weighted_mean_sd.Rd man/get_start.Rd man/elnet.fit.Rd man/MultiGaussianExample.Rd man/cox_obj_function.Rd man/glmnet-internal.Rd man/predict.glmnet.Rd man/glmnet.Rd man/glmnet.control.Rd man/bigGlm.Rd man/print.glmnet.Rd man/glmnet-package.Rd man/glmnet.measures.Rd man/get_cox_lambda_max.Rd man/na.replace.Rd man/get_eta.Rd man/mycoxph.Rd man/cv.glmnet.Rd man/dev_function.Rd man/PoissonExample.Rd man/SparseExample.Rd man/pen_function.Rd man/coxnet.deviance.Rd

man/figures/logo.png

glmnet documentation built on Aug. 22, 2023, 9:12 a.m.