gnm: Generalized Nonlinear Models

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Functions to specify and fit generalized nonlinear models, including models with multiplicative interaction terms such as the UNIDIFF model from sociology and the AMMI model from crop science, and many others. Over-parameterized representations of models are used throughout; functions are provided for inference on estimable parameter combinations, as well as standard methods for diagnostics etc.

Author
Heather Turner [aut, cre], David Firth [aut], Brian Ripley [ctb], Bill Venables [ctb], Douglas M. Bates [ctb], Martin Maechler [ctb]
Date of publication
2015-04-22 12:08:50
Maintainer
Heather Turner <ht@heatherturner.net>
License
GPL-2 | GPL-3
Version
1.0-8
URLs

View on CRAN

Man pages

anova.gnm
Analysis of Deviance for Generalized Nonlinear Models
asGnm
Coerce Linear Model to gnm Object
backPain
Data on Back Pain Prognosis, from Anderson (1984)
barley
Jenkyn's Data on Leaf-blotch on Barley
barleyHeights
Heights of Barley Plants
cautres
Data on Class, Religion and Vote in France
checkEstimable
Check Whether One or More Parameter Combinations in a gnm...
confint.gnm
Compute Confidence Intervals of Parameters in a Generalized...
Const
Specify a Constant in a "nonlin" Function Predictor
Diag
Equality of Two or More Factors
Dref
Specify a Diagonal Reference Term in a gnm Model Formula
erikson
Intergenerational Class Mobility in England/Wales, France and...
exitInfo
Print Exit Information for gnm Fit
Exp
Specify the Exponential of a Predictor in a gnm Model Formula
expandCategorical
Expand Data Frame by Re-expressing Categorical Data as Counts
friend
Occupation of Respondents and Their Closest Friend
getContrasts
Estimated Contrasts and Standard Errors for Parameters in a...
gnm
Fitting Generalized Nonlinear Models
gnm-defunct
Defunct Functions in gnm Package
gnm-package
Generalized Nonlinear Models
House2001
Data on twenty roll calls in the US House of Representatives,...
instances
Specify Multiple Instances of a Nonlinear Term in a gnm Model...
Inv
Specify the Reciprocal of a Predictor in a gnm Model Formula
meanResiduals
Average Residuals within Factor Levels
mentalHealth
Data on Mental Health and Socioeconomic Status
model.matrix.gnm
Local Design Matrix for a Generalized Nonlinear Model
MPinv
Moore-Penrose Pseudoinverse of a Real-valued Matrix
Mult
Specify a Product of Predictors in a gnm Model Formula
MultHomog
Specify a Multiplicative Interaction with Homogeneous Effects...
nonlin.function
Functions to Specify Nonlinear Terms in gnm Models
ofInterest
Coefficents of Interest in a Generalized Nonlinear Model
parameters
Extract Constrained and Estimated Parameters from a gnm...
pickCoef
Get Indices or Values of Selected Model Coefficients
plot.gnm
Plot Diagnostics for a gnm Object
predict.gnm
Predict Method for Generalized Nonlinear Models
profile.gnm
Profile Deviance for Parameters in a Generalized Nonlinear...
residSVD
Multiplicative Approximation of Model Residuals
se
Standard Errors of Linear Parameter Combinations in gnm...
summary.gnm
Summarize Generalized Nonlinear Model Fits
Symm
Symmetric Interaction of Factors
termPredictors
Extract Term Contributions to Predictor
Topo
Topological Interaction of Factors
vcov.gnm
Variance-covariance Matrix for Parameters in a Generalized...
voting
Data on Social Mobility and the Labour Vote
wedderburn
Wedderburn Quasi-likelihood Family
wheat
Wheat Yields from Mexican Field Trials
yaish
Class Mobility by Level of Education in Israel

Files in this package

gnm
gnm/inst
gnm/inst/CITATION
gnm/inst/NEWS
gnm/inst/doc
gnm/inst/doc/gnmOverview.Rnw
gnm/inst/doc/gnmOverview.pdf
gnm/inst/doc/gnmOverview.R
gnm/tests
gnm/tests/nls.Rout.save
gnm/tests/logistic.Rout.save
gnm/tests/unidiff.Rout.save
gnm/tests/gammi.R
gnm/tests/gammi.Rout.save
gnm/tests/bwt.Rout.save
gnm/tests/stereotype.Rout.save
gnm/tests/RChomog.R
gnm/tests/logexcess.Rout.save
gnm/tests/diagonalRef.R
gnm/tests/RC.R
gnm/tests/logexcess.R
gnm/tests/RC.Rout.save
gnm/tests/bwt.R
gnm/tests/doubleUnidiff.R
gnm/tests/unidiff.R
gnm/tests/diagonalRef.Rout.save
gnm/tests/logistic.R
gnm/tests/doubleUnidiff.Rout.save
gnm/tests/biplot.Rout.save
gnm/tests/nls.R
gnm/tests/stereotype.R
gnm/tests/biplot.R
gnm/tests/RChomog.Rout.save
gnm/src
gnm/src/Makevars
gnm/src/gnm.c
gnm/NAMESPACE
gnm/demo
gnm/demo/gnm.R
gnm/demo/00Index
gnm/data
gnm/data/yaish.rda
gnm/data/barleyHeights.rda
gnm/data/backPain.rda
gnm/data/House2001.rda
gnm/data/wheat.rda
gnm/data/barley.rda
gnm/data/friend.rda
gnm/data/voting.rda
gnm/data/erikson.rda
gnm/data/mentalHealth.rda
gnm/data/cautres.rda
gnm/R
gnm/R/dummy.coef.gnm.R
gnm/R/Logistic.R
gnm/R/effects.gnm.R
gnm/R/gnm.R
gnm/R/print.summary.gnm.R
gnm/R/labels.gnm.R
gnm/R/asGnm.default.R
gnm/R/hashSplit.R
gnm/R/instances.R
gnm/R/summary.gnm.R
gnm/R/gnmStart.R
gnm/R/sumExpression.R
gnm/R/model.matrix.gnm.R
gnm/R/residuals.gnm.R
gnm/R/dfbeta.gnm.R
gnm/R/dfbetas.gnm.R
gnm/R/Topo.R
gnm/R/gnm-defunct.R
gnm/R/pickCoef.R
gnm/R/vcov.gnm.R
gnm/R/getContrasts.R
gnm/R/plot.gnm.R
gnm/R/checkEstimable.R
gnm/R/Raise.R
gnm/R/exitInfo.R
gnm/R/kappa.gnm.R
gnm/R/residSVD.R
gnm/R/expandCategorical.R
gnm/R/weights.gnm.R
gnm/R/cooks.distance.gnm.R
gnm/R/anova.gnm.R
gnm/R/gnmTools.R
gnm/R/glm.fit.e.R
gnm/R/Log.R
gnm/R/se.R
gnm/R/boxcox.gnm.R
gnm/R/Inv.R
gnm/R/print.meanResiduals.R
gnm/R/Symm.R
gnm/R/Exp.R
gnm/R/psum.R
gnm/R/coef.gnm.R
gnm/R/ofInterestReplacement.R
gnm/R/quickRank.R
gnm/R/Dref.R
gnm/R/quick.glm.fit.R
gnm/R/gnmFit.R
gnm/R/termPredictors.gnm.R
gnm/R/weighted.MM.R
gnm/R/prattle.R
gnm/R/updateLinear.R
gnm/R/termPredictors.default.R
gnm/R/asGnm.glm.R
gnm/R/Const.R
gnm/R/Logit.R
gnm/R/logtrans.gnm.R
gnm/R/proj.gnm.R
gnm/R/drop1.gnm.R
gnm/R/hatvalues.gnm.R
gnm/R/print.gnm.R
gnm/R/Diag.R
gnm/R/rstudent.gnm.R
gnm/R/termPredictors.R
gnm/R/cholInv.R
gnm/R/meanResiduals.R
gnm/R/plot.profile.gnm.R
gnm/R/Mult.R
gnm/R/variable.names.gnm.R
gnm/R/DrefWeights.R
gnm/R/print.profile.gnm.R
gnm/R/rstandard.gnm.R
gnm/R/wedderburn.R
gnm/R/MPinv.R
gnm/R/confint.profile.gnm.R
gnm/R/asGnm.R
gnm/R/print.vcov.gnm.R
gnm/R/predict.gnm.R
gnm/R/naToZero.R
gnm/R/fitted.gnm.R
gnm/R/dropterm.gnm.R
gnm/R/grp.sum.R
gnm/R/unlistOneLevel.R
gnm/R/confint.gnm.R
gnm/R/model.frame.gnm.R
gnm/R/gnmTerms.R
gnm/R/profile.gnm.R
gnm/R/influence.gnm.R
gnm/R/pprod.R
gnm/R/alias.gnm.R
gnm/R/asGnm.lm.R
gnm/R/add1.gnm.R
gnm/R/print.coef.gnm.R
gnm/R/getData.R
gnm/R/update.gnm.R
gnm/R/addterm.gnm.R
gnm/R/parameters.R
gnm/R/MultHomog.R
gnm/R/checkCall.R
gnm/R/zzz.R
gnm/R/summary.meanResiduals.R
gnm/R/ofInterest.R
gnm/R/nonlinTerms.R
gnm/vignettes
gnm/vignettes/fig-profilePlot.pdf
gnm/vignettes/screenshot1.png
gnm/vignettes/fig-LCqvplot.pdf
gnm/vignettes/fig-deaths1921-1940.pdf
gnm/vignettes/gnm.bib
gnm/vignettes/fig-Effect_plots.pdf
gnm/vignettes/gnmOverview.Rnw
gnm/vignettes/screenshot2.png
gnm/vignettes/screenshot3.png
gnm/vignettes/fig-LCover45.pdf
gnm/vignettes/fig-LCall.pdf
gnm/MD5
gnm/build
gnm/build/vignette.rds
gnm/DESCRIPTION
gnm/man
gnm/man/Symm.Rd
gnm/man/Const.Rd
gnm/man/barleyHeights.Rd
gnm/man/House2001.Rd
gnm/man/pickCoef.Rd
gnm/man/termPredictors.Rd
gnm/man/confint.gnm.Rd
gnm/man/expandCategorical.Rd
gnm/man/summary.gnm.Rd
gnm/man/anova.gnm.Rd
gnm/man/Exp.Rd
gnm/man/instances.Rd
gnm/man/wheat.Rd
gnm/man/gnm-defunct.Rd
gnm/man/plot.gnm.Rd
gnm/man/barley.Rd
gnm/man/Mult.Rd
gnm/man/ofInterest.Rd
gnm/man/profile.gnm.Rd
gnm/man/gnm.Rd
gnm/man/gnm-package.Rd
gnm/man/asGnm.Rd
gnm/man/model.matrix.gnm.Rd
gnm/man/erikson.Rd
gnm/man/predict.gnm.Rd
gnm/man/Topo.Rd
gnm/man/se.Rd
gnm/man/wedderburn.Rd
gnm/man/meanResiduals.Rd
gnm/man/MultHomog.Rd
gnm/man/voting.Rd
gnm/man/parameters.Rd
gnm/man/backPain.Rd
gnm/man/cautres.Rd
gnm/man/Dref.Rd
gnm/man/MPinv.Rd
gnm/man/residSVD.Rd
gnm/man/friend.Rd
gnm/man/mentalHealth.Rd
gnm/man/getContrasts.Rd
gnm/man/vcov.gnm.Rd
gnm/man/exitInfo.Rd
gnm/man/Inv.Rd
gnm/man/yaish.Rd
gnm/man/nonlin.function.Rd
gnm/man/Diag.Rd
gnm/man/checkEstimable.Rd