gnm: Generalized Nonlinear Models
Version 1.0-8

Functions to specify and fit generalized nonlinear models, including models with multiplicative interaction terms such as the UNIDIFF model from sociology and the AMMI model from crop science, and many others. Over-parameterized representations of models are used throughout; functions are provided for inference on estimable parameter combinations, as well as standard methods for diagnostics etc.

Browse man pages Browse package API and functions Browse package files

AuthorHeather Turner [aut, cre], David Firth [aut], Brian Ripley [ctb], Bill Venables [ctb], Douglas M. Bates [ctb], Martin Maechler [ctb]
Date of publication2015-04-22 12:08:50
MaintainerHeather Turner <ht@heatherturner.net>
LicenseGPL-2 | GPL-3
Version1.0-8
URL http://go.warwick.ac.uk/gnm
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("gnm")

Man pages

anova.gnm: Analysis of Deviance for Generalized Nonlinear Models
asGnm: Coerce Linear Model to gnm Object
backPain: Data on Back Pain Prognosis, from Anderson (1984)
barley: Jenkyn's Data on Leaf-blotch on Barley
barleyHeights: Heights of Barley Plants
cautres: Data on Class, Religion and Vote in France
checkEstimable: Check Whether One or More Parameter Combinations in a gnm...
confint.gnm: Compute Confidence Intervals of Parameters in a Generalized...
Const: Specify a Constant in a "nonlin" Function Predictor
Diag: Equality of Two or More Factors
Dref: Specify a Diagonal Reference Term in a gnm Model Formula
erikson: Intergenerational Class Mobility in England/Wales, France and...
exitInfo: Print Exit Information for gnm Fit
Exp: Specify the Exponential of a Predictor in a gnm Model Formula
expandCategorical: Expand Data Frame by Re-expressing Categorical Data as Counts
friend: Occupation of Respondents and Their Closest Friend
getContrasts: Estimated Contrasts and Standard Errors for Parameters in a...
gnm: Fitting Generalized Nonlinear Models
gnm-defunct: Defunct Functions in gnm Package
gnm-package: Generalized Nonlinear Models
House2001: Data on twenty roll calls in the US House of Representatives,...
instances: Specify Multiple Instances of a Nonlinear Term in a gnm Model...
Inv: Specify the Reciprocal of a Predictor in a gnm Model Formula
meanResiduals: Average Residuals within Factor Levels
mentalHealth: Data on Mental Health and Socioeconomic Status
model.matrix.gnm: Local Design Matrix for a Generalized Nonlinear Model
MPinv: Moore-Penrose Pseudoinverse of a Real-valued Matrix
Mult: Specify a Product of Predictors in a gnm Model Formula
MultHomog: Specify a Multiplicative Interaction with Homogeneous Effects...
nonlin.function: Functions to Specify Nonlinear Terms in gnm Models
ofInterest: Coefficents of Interest in a Generalized Nonlinear Model
parameters: Extract Constrained and Estimated Parameters from a gnm...
pickCoef: Get Indices or Values of Selected Model Coefficients
plot.gnm: Plot Diagnostics for a gnm Object
predict.gnm: Predict Method for Generalized Nonlinear Models
profile.gnm: Profile Deviance for Parameters in a Generalized Nonlinear...
residSVD: Multiplicative Approximation of Model Residuals
se: Standard Errors of Linear Parameter Combinations in gnm...
summary.gnm: Summarize Generalized Nonlinear Model Fits
Symm: Symmetric Interaction of Factors
termPredictors: Extract Term Contributions to Predictor
Topo: Topological Interaction of Factors
vcov.gnm: Variance-covariance Matrix for Parameters in a Generalized...
voting: Data on Social Mobility and the Labour Vote
wedderburn: Wedderburn Quasi-likelihood Family
wheat: Wheat Yields from Mexican Field Trials
yaish: Class Mobility by Level of Education in Israel

Functions

Const Man page Source code
Diag Man page Source code
Dref Man page Source code
DrefWeights Man page Source code
Exp Man page Source code
House2001 Man page
Inv Man page Source code
Log Source code
Logistic Source code
Logit Source code
MPinv Man page Source code
Mult Man page Source code
MultHomog Man page Source code
Nonlin Man page Source code
Raise Source code
Symm Man page Source code
Topo Man page
add1.gnm Source code
addterm.gnm Source code
alias.gnm Source code
anova.gnm Man page Source code
asGnm Man page Source code
asGnm.default Source code
asGnm.glm Source code
asGnm.lm Source code
backPain Man page
barley Man page
barleyHeights Man page
boxcox.gnm Source code
cautres Man page
checkCall Source code
checkEstimable Man page Source code
cholInv Source code
coef.gnm Source code
confint.gnm Man page Source code
confint.profile.gnm Man page Source code
cooks.distance.gnm Source code
dfbeta.gnm Source code
dfbetas.gnm Source code
drop1.gnm Source code
dropterm.gnm Source code
dummy.coef.gnm Source code
effects.gnm Source code
erikson Man page
exitInfo Man page Source code
expandCategorical Man page Source code
fitted.gnm Source code
friend Man page
getContrasts Man page Source code
getData Source code
getModelFrame Man page Source code
glm.fit.e Source code
gnm Man page Source code
gnm-defunct Man page
gnm-package Man page
gnmFit Source code
gnmStart Source code
gnmTerms Source code
grp.sum Source code
hashSplit Source code
hatvalues.gnm Source code
influence.gnm Source code
instances Man page Source code
kappa.gnm Source code
labels.gnm Source code
logtrans.gnm Source code
meanResiduals Man page Source code
mentalHealth Man page
model.frame.gnm Source code
model.matrix.gnm Man page Source code
naToZero Source code
nonlin.function Man page
nonlinTerms Source code
ofInterest Man page Source code
ofInterest<- Man page
onUnload Source code
parameters Man page Source code
pickCoef Man page Source code
plot.gnm Man page Source code
plot.profile.gnm Man page Source code
pprod Source code
prattle Source code
predict.gnm Man page Source code
print.coef.gnm Source code
print.gnm Source code
print.meanResiduals Source code
print.profile.gnm Source code
print.summary.gnm Man page Source code
print.vcov.gnm Source code
profile.gnm Man page Source code
proj.gnm Source code
psum Source code
qrSolve Man page Source code
quickRank Source code
residSVD Man page Source code
residuals.gnm Source code
rstandard.gnm Source code
rstudent.gnm Source code
se Man page Source code
sumExpression Source code
summary.gnm Man page Source code
summary.meanResiduals Source code
termPredictors Man page Source code
termPredictors.default Source code
termPredictors.gnm Source code
unlistOneLevel Source code
update.gnm Source code
updateLinear Source code
variable.names.gnm Source code
vcov.gnm Man page Source code
voting Man page
wedderburn Man page
weighted.MM Source code
weights.gnm Source code
wheat Man page
yaish Man page

Files

inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/gnmOverview.Rnw
inst/doc/gnmOverview.pdf
inst/doc/gnmOverview.R
tests
tests/nls.Rout.save
tests/logistic.Rout.save
tests/unidiff.Rout.save
tests/gammi.R
tests/gammi.Rout.save
tests/bwt.Rout.save
tests/stereotype.Rout.save
tests/RChomog.R
tests/logexcess.Rout.save
tests/diagonalRef.R
tests/RC.R
tests/logexcess.R
tests/RC.Rout.save
tests/bwt.R
tests/doubleUnidiff.R
tests/unidiff.R
tests/diagonalRef.Rout.save
tests/logistic.R
tests/doubleUnidiff.Rout.save
tests/biplot.Rout.save
tests/nls.R
tests/stereotype.R
tests/biplot.R
tests/RChomog.Rout.save
src
src/Makevars
src/gnm.c
NAMESPACE
demo
demo/gnm.R
demo/00Index
data
data/yaish.rda
data/barleyHeights.rda
data/backPain.rda
data/House2001.rda
data/wheat.rda
data/barley.rda
data/friend.rda
data/voting.rda
data/erikson.rda
data/mentalHealth.rda
data/cautres.rda
R
R/dummy.coef.gnm.R
R/Logistic.R
R/effects.gnm.R
R/gnm.R
R/print.summary.gnm.R
R/labels.gnm.R
R/asGnm.default.R
R/hashSplit.R
R/instances.R
R/summary.gnm.R
R/gnmStart.R
R/sumExpression.R
R/model.matrix.gnm.R
R/residuals.gnm.R
R/dfbeta.gnm.R
R/dfbetas.gnm.R
R/Topo.R
R/gnm-defunct.R
R/pickCoef.R
R/vcov.gnm.R
R/getContrasts.R
R/plot.gnm.R
R/checkEstimable.R
R/Raise.R
R/exitInfo.R
R/kappa.gnm.R
R/residSVD.R
R/expandCategorical.R
R/weights.gnm.R
R/cooks.distance.gnm.R
R/anova.gnm.R
R/gnmTools.R
R/glm.fit.e.R
R/Log.R
R/se.R
R/boxcox.gnm.R
R/Inv.R
R/print.meanResiduals.R
R/Symm.R
R/Exp.R
R/psum.R
R/coef.gnm.R
R/ofInterestReplacement.R
R/quickRank.R
R/Dref.R
R/quick.glm.fit.R
R/gnmFit.R
R/termPredictors.gnm.R
R/weighted.MM.R
R/prattle.R
R/updateLinear.R
R/termPredictors.default.R
R/asGnm.glm.R
R/Const.R
R/Logit.R
R/logtrans.gnm.R
R/proj.gnm.R
R/drop1.gnm.R
R/hatvalues.gnm.R
R/print.gnm.R
R/Diag.R
R/rstudent.gnm.R
R/termPredictors.R
R/cholInv.R
R/meanResiduals.R
R/plot.profile.gnm.R
R/Mult.R
R/variable.names.gnm.R
R/DrefWeights.R
R/print.profile.gnm.R
R/rstandard.gnm.R
R/wedderburn.R
R/MPinv.R
R/confint.profile.gnm.R
R/asGnm.R
R/print.vcov.gnm.R
R/predict.gnm.R
R/naToZero.R
R/fitted.gnm.R
R/dropterm.gnm.R
R/grp.sum.R
R/unlistOneLevel.R
R/confint.gnm.R
R/model.frame.gnm.R
R/gnmTerms.R
R/profile.gnm.R
R/influence.gnm.R
R/pprod.R
R/alias.gnm.R
R/asGnm.lm.R
R/add1.gnm.R
R/print.coef.gnm.R
R/getData.R
R/update.gnm.R
R/addterm.gnm.R
R/parameters.R
R/MultHomog.R
R/checkCall.R
R/zzz.R
R/summary.meanResiduals.R
R/ofInterest.R
R/nonlinTerms.R
vignettes
vignettes/fig-profilePlot.pdf
vignettes/screenshot1.png
vignettes/fig-LCqvplot.pdf
vignettes/fig-deaths1921-1940.pdf
vignettes/gnm.bib
vignettes/fig-Effect_plots.pdf
vignettes/gnmOverview.Rnw
vignettes/screenshot2.png
vignettes/screenshot3.png
vignettes/fig-LCover45.pdf
vignettes/fig-LCall.pdf
MD5
build
build/vignette.rds
DESCRIPTION
man
man/Symm.Rd
man/Const.Rd
man/barleyHeights.Rd
man/House2001.Rd
man/pickCoef.Rd
man/termPredictors.Rd
man/confint.gnm.Rd
man/expandCategorical.Rd
man/summary.gnm.Rd
man/anova.gnm.Rd
man/Exp.Rd
man/instances.Rd
man/wheat.Rd
man/gnm-defunct.Rd
man/plot.gnm.Rd
man/barley.Rd
man/Mult.Rd
man/ofInterest.Rd
man/profile.gnm.Rd
man/gnm.Rd
man/gnm-package.Rd
man/asGnm.Rd
man/model.matrix.gnm.Rd
man/erikson.Rd
man/predict.gnm.Rd
man/Topo.Rd
man/se.Rd
man/wedderburn.Rd
man/meanResiduals.Rd
man/MultHomog.Rd
man/voting.Rd
man/parameters.Rd
man/backPain.Rd
man/cautres.Rd
man/Dref.Rd
man/MPinv.Rd
man/residSVD.Rd
man/friend.Rd
man/mentalHealth.Rd
man/getContrasts.Rd
man/vcov.gnm.Rd
man/exitInfo.Rd
man/Inv.Rd
man/yaish.Rd
man/nonlin.function.Rd
man/Diag.Rd
man/checkEstimable.Rd
gnm documentation built on May 19, 2017, 11:45 a.m.