Description Usage Arguments Details Value Author(s) See Also Examples

An extension of barplot2. Creates bar- and line-plots mimicking the style of OpenOffice plots. This utility can plot the values next to each point or bar as well as confidence intervals.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | ```
ooplot(data, ...)
## Default S3 method:
ooplot(data, width=1, space=NULL, names.arg=NULL,
legend.text=NULL, horiz=FALSE,
density=NULL, angle=45, kmg="fpnumkMGTP",
kmglim=TRUE,
type=c("xyplot", "linear", "barplot", "stackbar"),
col=heat.colors(NC), prcol=NULL,
border=par("fg"), main=NULL, sub=NULL,
xlab=NULL, ylab=NULL, xlim=NULL, ylim=NULL,
xpd=TRUE, log="", axes=TRUE,
axisnames=TRUE, prval=TRUE, lm=FALSE,
cex.axis=par("cex.axis"),
cex.names=par("cex.axis"),
cex.values=par("cex"),inside=TRUE,
plot=TRUE, axis.lty=0, plot.ci=FALSE,
ci.l=NULL, ci.u=NULL, ci.color="black",
ci.lty="solid", ci.lwd=1, plot.grid=FALSE,
grid.inc=NULL, grid.lty="dotted",
grid.lwd=1, grid.col="black", add=FALSE,
by.row=FALSE, ...)
``` |

`data` |
a matrix of values describing the values that make up the
plot. The first column of |

`width` |
optional vector of barwidths. Re-cycled to the number of bars drawn. A single value will have no visible effect. |

`space` |
the amount of space left before each bar. May be given
as a single number or one number per bar. If |

`names.arg` |
a vector of names to be plotted below each bar or
group of bars. If this argument is omitted, then the names are
taken from the row names of |

`legend.text` |
a vector of text used to construct a legend for the
plot, or a logical indicating whether a legend should be included;
if |

`horiz` |
a logical value. If |

`density` |
a vector giving the the density of shading lines, in
lines per inch, for the bars or bar components.
The default value of |

`angle` |
the slope of shading lines, given as an angle in degrees (counter-clockwise), for the bars or bar components. |

`kmg` |
the set of SI units to convert, defaults to "fpnumkMGTP". See below for details. |

`kmglim` |
logical. If |

`type` |
a string indicating the preferred format of the plot, choices are: xyplot : plot where y is plotted against the x-value. linear : plot where y values are plotted against equidistant x-values. barplot : plot where y values are represented as bars against equidistant x-values. stackplot : plot where y values are stacked for identical x-values and bars are equidistant. |

`col` |
a vector of colors for the bars or bar components. |

`prcol` |
the color to be used for the plot region. |

`border` |
the color to be used for the border of the bars. |

`main, sub` |
overall and sub titles for the plot. |

`xlab` |
a label for the x axis. |

`ylab` |
a label for the y axis. |

`xlim` |
limits for the x axis. |

`ylim` |
limits for the y axis. |

`xpd` |
logical. Should bars be allowed to go outside region? |

`log` |
a character string which contains ‘"x"’ if the x axis is to be logarithmic, ‘"y"’ if the y axis is to be logarithmic and ‘"xy"’ or ‘"yx"’ if both axes are to be logarithmic. |

`axes` |
logical. If |

`axisnames` |
logical. If |

`prval` |
logical. If |

`lm` |
logical. If |

`cex.axis, cex.names, cex.values` |
character scaling factor for numeric axis labels, names, and displayed values, respectively. |

`inside` |
logical. If |

`plot` |
logical. If |

`axis.lty` |
the graphics parameter |

`plot.ci` |
logical. If |

`ci.l,ci.u` |
The confidence intervals (ci.l = lower bound, ci.u =
upper bound) to be plotted if |

`ci.color` |
the color for the confidence interval line segments |

`ci.lty` |
the line type for the confidence interval line segments |

`ci.lwd` |
the line width for the confidence interval line segments |

`plot.grid` |
if |

`grid.inc` |
the number of grid increments to be plotted |

`grid.lty` |
the line type for the grid |

`grid.lwd` |
the line width for the grid |

`grid.col` |
the line color for the grid |

`add` |
logical, if |

`by.row` |
Logical value. If |

`...` |
further graphical parameters ( |

Plot units are automatically scaled to SI units based on the
maximum value present, according to the set of units specified by
characters in the `kmg`

parameter. These letters are interpreted
as

- P
peta = 1E15

- T
tera = 1E12

- G
giga = 1E09

- M
mega = 1E06

- k
kilo = 1E03

- m
milli= 1E-03

- u
micro= 1E-06

- n
nano = 1E-09

- p
pico = 1E-12

- f
femto= 1E-15

with the default being "fpnumkMGTP" (all of these units). For example, if the largest value plotted is 1243000, it would be presented as 1.234M.

A numeric vector (or matrix, when `beside = TRUE`

), say
`mp`

, giving the coordinates of *all* the bar midpoints
drawn, useful for adding to the graph.

If `beside`

is true, use `colMeans(mp)`

for the
midpoints of each *group* of bars, see example.

Lodewijk Bonebakker [email protected] with modifications by Gregory R. Warnes [email protected]. Based on barplot2().

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 | ```
data(VADeaths, package = "datasets")
VADeaths <- cbind( Age=c(50,55,60,65,70), VADeaths)
mp <- ooplot(VADeaths) # default
mp <- ooplot(VADeaths, type="xyplot") # same as default
mp <- ooplot(VADeaths, type="linear") # linear scale
mp <- ooplot(VADeaths, type="linear", log="y") # log scale on y axis
mp <- ooplot(VADeaths, type="barplot") # barplot
mp <- ooplot(VADeaths, type="stackbar") # stacked
tot <- colMeans(VADeaths[,-1])
ooplot(VADeaths,
col = c("lightblue", "mistyrose", "lightcyan", "lavender"),
legend = colnames(VADeaths)[-1], ylim = c(0, 100),
type="barplot", cex.values=0.75)
title(main = "Death Rates in Virginia", font.main = 4)
##
## Capability demo
##
## examples for the ooplot routine
##
## create some test data
test1 <- data.frame(x=c(0,1,2,3,4), lin=c(0,1,2,3,4))
test2 <- data.frame(x=c(0,1,2,3,4), par=c(0,1,4,9,16))
test3 <- data.frame(x=c(-2,-1,0,1,2),y2=c(4,1,0,1,4))
## single line test example
test1f <- test1
## two column example
test2f <- merge(test1,test2,by.x="x",all=TRUE,sort=TRUE)
## three column example
test3f <- merge(test2f,test3,by.x="x",all=TRUE,sort=TRUE)
## subset, single row, example
test5r <- test3f[5,]
##
## xyplot, linear, barplot, stackbar
mat <- matrix(c(1:16),4,4,byrow=TRUE)
layout(mat)
ooplot(test1f,type="barplot",col=c("red"))
title(main="barplot")
ooplot(test2f,type="barplot",col=c("red","blue"))
ooplot(test3f,type="barplot",col=c("red","blue","green"))
ooplot(test5r,type="barplot",col=c("red","blue","green"))
ooplot(test1f,type="xyplot",col=c("red"))
title(main="xyplot")
ooplot(test2f,type="xyplot",col=c("red","blue"))
ooplot(test3f,type="xyplot",col=c("red","blue","green"))
ooplot(test5r,type="xyplot",col=c("red","blue","green"))
ooplot(test1f,type="linear",col=c("red"))
title(main="linear")
ooplot(test2f,type="linear",col=c("red","blue"))
ooplot(test3f,type="linear",col=c("red","blue","green"))
ooplot(test5r,type="linear",col=c("red","blue","green"))
ooplot(test1f,type="stackbar",col=c("red"))
title(main="stackbar")
ooplot(test2f,type="stackbar",col=c("red","blue"))
ooplot(test3f,type="stackbar",col=c("red","blue","green"))
ooplot(test5r,type="stackbar",col=c("red","blue","green"))
# restore default layout (1 plot/page)
layout(1)
``` |

gplots documentation built on May 30, 2017, 3:05 a.m.

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