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grandR: Comprehensive Analysis of Nucleotide Conversion Sequencing Data
Nucleotide conversion sequencing experiments have been developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such experiments require specialized tools for primary processing such as GRAND-SLAM, (see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for downstream analyses. 'grandR' provides a comprehensive toolbox for quality control, kinetic modeling, differential gene expression analysis and visualization of such data. Fast Wilcoxon tests are supported via the 'presto' package (available at <https://github.com/immunogenomics/presto>).
Getting started
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Package details |
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| Author | Florian Erhard [aut, cre] (ORCID: <https://orcid.org/0000-0002-3574-6983>), Teresa Rummel [ctb], Julian Selke [ctb] |
| Maintainer | Florian Erhard <Florian.Erhard@informatik.uni-regensburg.de> |
| License | Apache License (>= 2) |
| Version | 0.2.7 |
| URL | https://github.com/erhard-lab/grandR |
| Package repository | View on CRAN |
| Installation |
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