growcurves: Bayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects

Employs a non-parametric formulation for by-subject random effect parameters to borrow strength over a constrained number of repeated measurement waves in a fashion that permits multiple effects per subject. One class of models employs a Dirichlet process (DP) prior for the subject random effects and includes an additional set of random effects that utilize a different grouping factor and are mapped back to clients through a multiple membership weight matrix; e.g. treatment(s) exposure or dosage. A second class of models employs a dependent DP (DDP) prior for the subject random effects that directly incorporates the multiple membership pattern.

Install the latest version of this package by entering the following in R:
install.packages("growcurves")
AuthorTerrance Savitsky
Date of publication2016-12-21 08:30:35
MaintainerTerrance Savitsky <tds151@gmail.com>
LicenseGPL (>= 2)
Version0.2.4.1

View on CRAN

Man pages

datbrghtmodterms: BRIGHT BDI depressive symptom data with (G = 4) module groups...

datbrghtterms: BRIGHT BDI depressive symptom data with (G = 4) session...

dateduc: Student test scores and associated teachers for a single...

datsim: Repeated measures for two groups of subjects drawn from mmcar...

datsimcov: Repeated measures for two groups of subjects drawn from mmcar...

datsimmult: Repeated measures for two groups of subjects with two...

ddpEffectsplot: Plot by-subject and by-treatment posterior mean values for...

ddpgrow: Bayesian semiparametric growth curve models.

ddpMCMCplots: generate plots of posterior samples under 'ddpgrow' model

ddpPost: Run a Bayesian mixed effects model for by-subject random...

ddp_quantiles: Produce quantile summaries of model posterior samples

dpgrow: Bayesian semiparametric growth curve models.

dpgrowmm: Bayesian semiparametric growth curve models with employment...

dpgrowmult: Bayesian semiparametric growth curve models under employment...

dpPost: Run a Bayesian mixed effects model for by-subject random...

effectsplot: Plot comparison of Effect parameters of a Multiple membership...

getmf: Produce fixed and random effects design matrices from single...

growcurves-package: Bayesian Semi and Nonparametric Growth Curve Models with...

growplot: Plot by-subject and by-group growth curves

growthCurve: Within subject model-predicted growth curve

lgmPost: Run a Bayesian mixed effects model for by-subject random...

mcmcPlots: generate plots of model(s) posterior results

mmCmvplusDpPost: Bayesian mixed effects model with a DP prior on by-subject...

mmCplusDpPost: Bayesian mixed effects model with a DP prior on by-subject...

mmIgroupDpPost: Bayesian mixed effects model with a DP prior on by-subject...

mmIplusDpPost: Bayesian mixed effects model with a DP prior on by-subject...

mmmultPost: Bayesian mixed effects model with a DP prior on by-subject...

plot.ddpgrow: Produce model plots

plot.dpgrow: Produce model plots

plot.dpgrowmm: Produce model plots

plot.dpgrowmult: Produce model plots

relabel: Relabel user vector input to sequential numerical

samples: Produce MCMC samples for model parameters

samples.ddpgrow: Produce samples of MCMC output

samples.dpgrow: Produce samples of MCMC output

samples.dpgrowmult: Produce samples of MCMC output

summary.ddpgrow: S3 functions of dpgrow

summary.dpgrow: S3 functions of dpgrow

summary.dpgrowmm: S3 functions of dpgrowmm

summary.dpgrowmult: S3 functions of dpgrowmult

summary_quantiles: Produce quantile summaries of model posterior samples

trtplot: Plot comparison of Mean Effects for Any Two Treatments

XZcov: generate fixed and random design matrices, X and Z

Functions

datbrghtmodterms Man page
datbrghtterms Man page
dateduc Man page
datsim Man page
datsimcov Man page
datsimmult Man page
ddpEffectsplot Man page
ddpgrow Man page
ddpMCMCplots Man page
ddpplots Man page
ddpPost Man page
ddp_quantiles Man page
dpgrow Man page
dpgrowmm Man page
dpgrowmult Man page
dpPost Man page
effectsplot Man page
getmf Man page
get.mf Man page
growcurves Man page
growcurves-package Man page
growplot Man page
growthCurve Man page
lgmPost Man page
mcmcPlots Man page
mmC Man page
mmCmv Man page
mmCmvplusDpPost Man page
mmCplusDpPost Man page
mmI Man page
mmIgroup Man page
mmIgroupDpPost Man page
mmIplusDpPost Man page
mmmultPost Man page
package-growcurves Man page
plot.ddpgrow Man page
plot.dpgrow Man page
plot.dpgrowmm Man page
plot.dpgrowmult Man page
plotmcmc Man page
quantiles Man page
relabel Man page
samples Man page
samples.ddpgrow Man page
samples.dpgrow Man page
samples.dpgrowmm Man page
samples.dpgrowmult Man page
summary.ddpgrow Man page
summary.dpgrow Man page
summary.dpgrowmm Man page
summary.dpgrowmult Man page
summary_quantiles Man page
trtplot Man page
XZ Man page
XZcov Man page

Files

inst
inst/CITATION
tests
tests/testthat
tests/testthat/test-relabel.R tests/testthat/test-XZcov.R tests/testthat/test-dpgrow.R tests/testthat/test-dpgrowmult.R tests/testthat/test-trtplot.R tests/testthat/test-dpgrowmm.R tests/testthat/test-effectsplot.R tests/testthat/test-growplot.R tests/testthat/test-dpgrowmm-mv.R tests/testthat/test-ddpgrow.R tests/test-all.R
src
src/Makevars
src/DPre.cpp
src/lgm.cpp
src/mmC.cpp
src/mmCplusDP.cpp
src/ddp.cpp
src/mmIgroupDP.cpp
src/mmIgroup.cpp
src/mmmult.cpp
src/mmIplusDP.cpp
src/mmCmvplusDP.cpp
src/Makevars.win
src/mmCmiar.cpp
src/mmCchol.cpp
src/mmC.h
src/mmI.cpp
NAMESPACE
NEWS
data
data/dateduc.RData
data/datbrghtmodterms.RData
data/datsimcov.RData
data/datsim.RData
data/datsimmult.RData
data/datbrghtterms.RData
R
R/trtplot.R R/XZcov.R R/datsimmult.R R/ddp_quantiles.R R/relabel.R R/dpgrowmm.R R/datsim.R R/dpgrowmult.R R/effectsplot.R R/getmf.R R/ddpeffectsplot.R R/summary_quantiles.R R/mcmcPlots.R R/ddpMCMCplots.R R/help.R R/ddpgrow.R R/dpgrow.R R/dateduc.R R/growthCurve.R R/datbrghtmodterms.R R/datbrghtterms.R R/datsimcov.R R/growplot.R
MD5
DESCRIPTION
man
man/dpgrowmult.Rd man/mmmultPost.Rd man/datbrghtterms.Rd man/getmf.Rd man/samples.ddpgrow.Rd man/dpPost.Rd man/dpgrow.Rd man/ddpEffectsplot.Rd man/growplot.Rd man/plot.ddpgrow.Rd man/dateduc.Rd man/plot.dpgrow.Rd man/mmIplusDpPost.Rd man/samples.dpgrowmult.Rd man/summary.ddpgrow.Rd man/datsimmult.Rd man/trtplot.Rd man/mmCplusDpPost.Rd man/summary.dpgrow.Rd man/ddpgrow.Rd man/datsim.Rd man/dpgrowmm.Rd man/summary_quantiles.Rd man/growcurves-package.Rd man/XZcov.Rd man/summary.dpgrowmm.Rd man/ddp_quantiles.Rd man/plot.dpgrowmult.Rd man/samples.Rd man/growthCurve.Rd man/summary.dpgrowmult.Rd man/mmIgroupDpPost.Rd man/effectsplot.Rd man/mmCmvplusDpPost.Rd man/mcmcPlots.Rd man/plot.dpgrowmm.Rd man/ddpMCMCplots.Rd man/relabel.Rd man/ddpPost.Rd man/datsimcov.Rd man/lgmPost.Rd man/datbrghtmodterms.Rd man/samples.dpgrow.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.