growcurves: Bayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects

Employs a non-parametric formulation for by-subject random effect parameters to borrow strength over a constrained number of repeated measurement waves in a fashion that permits multiple effects per subject. One class of models employs a Dirichlet process (DP) prior for the subject random effects and includes an additional set of random effects that utilize a different grouping factor and are mapped back to clients through a multiple membership weight matrix; e.g. treatment(s) exposure or dosage. A second class of models employs a dependent DP (DDP) prior for the subject random effects that directly incorporates the multiple membership pattern.

Author
Terrance Savitsky
Date of publication
2015-11-15 10:09:01
Maintainer
Terrance Savitsky <tds151@gmail.com>
License
GPL (>= 2)
Version
0.2.4.0

View on CRAN

Man pages

datbrghtmodterms
BRIGHT BDI depressive symptom data with (G = 4) module groups...
datbrghtterms
BRIGHT BDI depressive symptom data with (G = 4) session...
dateduc
Student test scores and associated teachers for a single...
datsim
Repeated measures for two groups of subjects drawn from mmcar...
datsimcov
Repeated measures for two groups of subjects drawn from mmcar...
datsimmult
Repeated measures for two groups of subjects with two...
ddpEffectsplot
Plot by-subject and by-treatment posterior mean values for...
ddpgrow
Bayesian semiparametric growth curve models.
ddpMCMCplots
generate plots of posterior samples under 'ddpgrow' model
ddpPost
Run a Bayesian mixed effects model for by-subject random...
ddp_quantiles
Produce quantile summaries of model posterior samples
dpgrow
Bayesian semiparametric growth curve models.
dpgrowmm
Bayesian semiparametric growth curve models with employment...
dpgrowmult
Bayesian semiparametric growth curve models under employment...
dpPost
Run a Bayesian mixed effects model for by-subject random...
effectsplot
Plot comparison of Effect parameters of a Multiple membership...
getmf
Produce fixed and random effects design matrices from single...
growcurves-package
Bayesian Semi and Nonparametric Growth Curve Models with...
growplot
Plot by-subject and by-group growth curves
growthCurve
Within subject model-predicted growth curve
lgmPost
Run a Bayesian mixed effects model for by-subject random...
mcmcPlots
generate plots of model(s) posterior results
mmCmvplusDpPost
Bayesian mixed effects model with a DP prior on by-subject...
mmCplusDpPost
Bayesian mixed effects model with a DP prior on by-subject...
mmIgroupDpPost
Bayesian mixed effects model with a DP prior on by-subject...
mmIplusDpPost
Bayesian mixed effects model with a DP prior on by-subject...
mmmultPost
Bayesian mixed effects model with a DP prior on by-subject...
plot.ddpgrow
Produce model plots
plot.dpgrow
Produce model plots
plot.dpgrowmm
Produce model plots
plot.dpgrowmult
Produce model plots
relabel
Relabel user vector input to sequential numerical
samples
Produce MCMC samples for model parameters
samples.ddpgrow
Produce samples of MCMC output
samples.dpgrow
Produce samples of MCMC output
samples.dpgrowmult
Produce samples of MCMC output
summary.ddpgrow
S3 functions of dpgrow
summary.dpgrow
S3 functions of dpgrow
summary.dpgrowmm
S3 functions of dpgrowmm
summary.dpgrowmult
S3 functions of dpgrowmult
summary_quantiles
Produce quantile summaries of model posterior samples
trtplot
Plot comparison of Mean Effects for Any Two Treatments
XZcov
generate fixed and random design matrices, X and Z

Files in this package

growcurves
growcurves/inst
growcurves/inst/CITATION
growcurves/tests
growcurves/tests/testthat
growcurves/tests/testthat/test-relabel.R
growcurves/tests/testthat/test-XZcov.R
growcurves/tests/testthat/test-dpgrow.R
growcurves/tests/testthat/test-dpgrowmult.R
growcurves/tests/testthat/test-trtplot.R
growcurves/tests/testthat/test-dpgrowmm.R
growcurves/tests/testthat/test-effectsplot.R
growcurves/tests/testthat/test-growplot.R
growcurves/tests/testthat/test-dpgrowmm-mv.R
growcurves/tests/testthat/test-ddpgrow.R
growcurves/tests/test-all.R
growcurves/src
growcurves/src/Makevars
growcurves/src/DPre.cpp
growcurves/src/lgm.cpp
growcurves/src/mmC.cpp
growcurves/src/mmCplusDP.cpp
growcurves/src/ddp.cpp
growcurves/src/mmIgroupDP.cpp
growcurves/src/mmIgroup.cpp
growcurves/src/mmmult.cpp
growcurves/src/mmIplusDP.cpp
growcurves/src/mmCmvplusDP.cpp
growcurves/src/Makevars.win
growcurves/src/mmCmiar.cpp
growcurves/src/mmCchol.cpp
growcurves/src/mmC.h
growcurves/src/mmI.cpp
growcurves/NAMESPACE
growcurves/NEWS
growcurves/data
growcurves/data/dateduc.RData
growcurves/data/datbrghtmodterms.RData
growcurves/data/datsimcov.RData
growcurves/data/datsim.RData
growcurves/data/datsimmult.RData
growcurves/data/datbrghtterms.RData
growcurves/R
growcurves/R/trtplot.R
growcurves/R/XZcov.R
growcurves/R/datsimmult.R
growcurves/R/ddp_quantiles.R
growcurves/R/relabel.R
growcurves/R/dpgrowmm.R
growcurves/R/datsim.R
growcurves/R/dpgrowmult.R
growcurves/R/effectsplot.R
growcurves/R/getmf.R
growcurves/R/ddpeffectsplot.R
growcurves/R/summary_quantiles.R
growcurves/R/mcmcPlots.R
growcurves/R/ddpMCMCplots.R
growcurves/R/help.R
growcurves/R/ddpgrow.R
growcurves/R/dpgrow.R
growcurves/R/dateduc.R
growcurves/R/growthCurve.R
growcurves/R/datbrghtmodterms.R
growcurves/R/datbrghtterms.R
growcurves/R/datsimcov.R
growcurves/R/growplot.R
growcurves/MD5
growcurves/DESCRIPTION
growcurves/man
growcurves/man/dpgrowmult.Rd
growcurves/man/mmmultPost.Rd
growcurves/man/datbrghtterms.Rd
growcurves/man/getmf.Rd
growcurves/man/samples.ddpgrow.Rd
growcurves/man/dpPost.Rd
growcurves/man/dpgrow.Rd
growcurves/man/ddpEffectsplot.Rd
growcurves/man/growplot.Rd
growcurves/man/plot.ddpgrow.Rd
growcurves/man/dateduc.Rd
growcurves/man/plot.dpgrow.Rd
growcurves/man/mmIplusDpPost.Rd
growcurves/man/samples.dpgrowmult.Rd
growcurves/man/summary.ddpgrow.Rd
growcurves/man/datsimmult.Rd
growcurves/man/trtplot.Rd
growcurves/man/mmCplusDpPost.Rd
growcurves/man/summary.dpgrow.Rd
growcurves/man/ddpgrow.Rd
growcurves/man/datsim.Rd
growcurves/man/dpgrowmm.Rd
growcurves/man/summary_quantiles.Rd
growcurves/man/growcurves-package.Rd
growcurves/man/XZcov.Rd
growcurves/man/summary.dpgrowmm.Rd
growcurves/man/ddp_quantiles.Rd
growcurves/man/plot.dpgrowmult.Rd
growcurves/man/samples.Rd
growcurves/man/growthCurve.Rd
growcurves/man/summary.dpgrowmult.Rd
growcurves/man/mmIgroupDpPost.Rd
growcurves/man/effectsplot.Rd
growcurves/man/mmCmvplusDpPost.Rd
growcurves/man/mcmcPlots.Rd
growcurves/man/plot.dpgrowmm.Rd
growcurves/man/ddpMCMCplots.Rd
growcurves/man/relabel.Rd
growcurves/man/ddpPost.Rd
growcurves/man/datsimcov.Rd
growcurves/man/lgmPost.Rd
growcurves/man/datbrghtmodterms.Rd
growcurves/man/samples.dpgrow.Rd