NEWS.md

In gsEasy: Gene Set Enrichment Analysis in R

gsEasy 1.3

• Fixed bug, now ensuring absolute value of correlation parameter r is used to compute enrichment score (credit to Michael from Berkeley).

gsEasy 1.1

• Now includes GO term gene sets data object (i.e. a list of character vectors, named by GO term, of genes associated with each term - can be loaded with data(GO_gene_sets) [based on Gene Ontology (2015-11-27) and human GO annotations file validated on 07/08/2016]).
• Change in how S argument of gset is interpreted when vector of scores r is supplied - now instead of the scores for S being those at the corresponding ranks in r, they are those at corresponding indices. For example, in version 1.0 the scores for S=1:3 would be the top 3 scores in r, however now it be the those of the first 3 elements of r. Behaviour has not changed for when S is character or when N is used instead of r.

gsEasy documentation built on May 29, 2024, 5 a.m.