gwasrapidd
'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

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gwasrapidd: 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog
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API

API for gwasrapidd
'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

Global functions
%>% Man page
[,associations,character,missing,missing-method Man page
[,associations,missing,missing,missing-method Man page
[,associations,numeric,missing,missing-method Man page
[,studies,character,missing,missing-method Man page
[,studies,missing,missing,missing-method Man page
[,studies,numeric,missing,missing-method Man page
[,traits,character,missing,missing-method Man page
[,traits,missing,missing,missing-method Man page
[,traits,numeric,missing,missing-method Man page
[,variants,character,missing,missing-method Man page
[,variants,missing,missing,missing-method Man page
[,variants,numeric,missing,missing-method Man page
a_obj_ensembl_ids Source code
a_obj_entrez_ids Source code
a_obj_to_associations Source code
a_obj_to_associations_tbl Source code
a_obj_to_ensembl_ids_tbl Source code
a_obj_to_entrez_ids_tbl Source code
a_obj_to_genes_tbl Source code
a_obj_to_loci_tbl Source code
a_obj_to_risk_alleles_tbl Source code
add_object_tier Man page Source code
allele_name Man page Source code
ancestral_groups_tbl Man page Source code
ancestries_tbl Man page Source code
association_to_study Man page Source code
association_to_trait Man page Source code
association_to_variant Man page Source code
associations Man page Source code
associations-class Man page
associations_drop_na Man page Source code
associations_ex01 Man page
associations_ex02 Man page
associations_tbl Man page Source code
bind Man page
child_efo_ids Man page Source code
contains_question_mark Man page Source code
countries_tbl Man page Source code
cytogenetic_band_to_genomic_range Man page Source code
cytogenetic_bands Man page
e_obj_to_traits Source code
empty_to_na Man page Source code
endofunction2 Source code
ensembl_ids_tbl Man page Source code
entrez_ids_tbl Man page Source code
equal_length Man page Source code
exists_variant Man page Source code
extract_association_id Man page Source code
filter_by_id Man page
filter_variants_by_standard_chromosomes Man page Source code
gc_examples Man page
gc_get Man page Source code
gc_request Man page Source code
gc_request_all Man page Source code
genomic_contexts_tbl Man page Source code
genotyping_techs_tbl Man page Source code
get_associations Man page Source code
get_associations_all Man page Source code
get_associations_by_association_id Man page Source code
get_associations_by_efo_id Man page Source code
get_associations_by_efo_trait Man page Source code
get_associations_by_pubmed_id Man page Source code
get_associations_by_study_id Man page Source code
get_associations_by_variant_id Man page Source code
get_child_efo Man page Source code
get_metadata Man page Source code
get_studies Man page Source code
get_studies_all Man page Source code
get_studies_by_association_id Man page Source code
get_studies_by_efo_id Man page Source code
get_studies_by_efo_trait Man page Source code
get_studies_by_efo_uri Man page Source code
get_studies_by_full_pvalue_set Man page Source code
get_studies_by_pubmed_id Man page Source code
get_studies_by_reported_trait Man page Source code
get_studies_by_study_id Man page Source code
get_studies_by_user_requested Man page Source code
get_studies_by_variant_id Man page Source code
get_traits Man page Source code
get_traits_all Man page Source code
get_traits_by_association_id Man page Source code
get_traits_by_efo_id Man page Source code
get_traits_by_efo_trait Man page Source code
get_traits_by_efo_uri Man page Source code
get_traits_by_pubmed_id Man page Source code
get_traits_by_study_id Man page Source code
get_variants Man page Source code
get_variants_all Man page Source code
get_variants_by_association_id Man page Source code
get_variants_by_cytogenetic_band Man page Source code
get_variants_by_efo_id Man page Source code
get_variants_by_efo_trait Man page Source code
get_variants_by_gene_name Man page Source code
get_variants_by_genomic_range Man page Source code
get_variants_by_pubmed_id Man page Source code
get_variants_by_reported_trait Man page Source code
get_variants_by_study_id Man page Source code
get_variants_by_variant_id Man page Source code
gwasrapidd Man page
gwasrapidd-package Man page
intersect Man page
is_association_id Man page Source code
is_ebi_reachable Man page Source code
is_efo_id Man page Source code
is_efo_id2 Man page Source code
is_embedded Man page Source code
is_empty_str Man page Source code
is_human_chromosome Man page Source code
is_mapped_gene Source code
is_paginated Man page Source code
is_pubmed_id Man page Source code
is_rs_id Man page Source code
is_study_id Man page Source code
list_to_s4 Man page Source code
loci_tbl Man page Source code
lst_inner_join Man page Source code
lst_left_join Man page Source code
lst_right_join Man page Source code
lstjoin Man page
metadata_lst Man page Source code
missing_to_na Man page Source code
n Man page
n,associations-method Man page
n,studies-method Man page
n,traits-method Man page
n,variants-method Man page
normalise_obj Man page Source code
obj_to_ancestral_groups Source code
obj_to_countries Source code
obj_to_studies Source code
object_type_from_url Man page
open_in_dbsnp Man page Source code
open_in_gtex Man page Source code
open_in_gwas_catalog Man page Source code
open_in_pubmed Man page Source code
p_endofunction Source code
peel_off_embedded Man page Source code
platforms_tbl Man page Source code
plst_inner_join Man page Source code
plst_left_join Man page Source code
plst_right_join Man page Source code
predicate2 Source code
publications_tbl Man page Source code
recode_missing Source code
recode_to_chr_na Source code
recursive_apply Man page Source code
reported_genes_tbl Man page Source code
risk_alleles_tbl Man page Source code
s4_to_list Man page Source code
set_testing_fast Man page Source code
set_testing_slow Man page Source code
setdiff Man page
setequal Man page
setop Man page
skip_if_testing_is_fast Man page Source code
studies Man page Source code
studies-class Man page
studies_drop_na Man page Source code
studies_ex01 Man page
studies_ex02 Man page
studies_tbl Man page Source code
study_to_association Man page Source code
study_to_trait Man page Source code
study_to_variant Man page Source code
subset-associations Man page
subset-studies Man page
subset-traits Man page
subset-variants Man page
sure Man page Source code
trait_to_association Man page Source code
trait_to_study Man page Source code
trait_to_variant Man page Source code
traits Man page Source code
traits-class Man page
traits_drop_na Man page Source code
traits_ex01 Man page
traits_ex02 Man page
traits_tbl Man page Source code
tws Man page
union Man page
v_ensembl_ids_tbl Man page Source code
v_entrez_ids_tbl Man page Source code
v_obj_to_ensembl_ids_tbl Source code
v_obj_to_entrez_ids_tbl Source code
v_obj_to_genomic_contexts_tbl Source code
v_obj_to_variants Source code
v_obj_to_variants_tbl Source code
variant_name Man page Source code
variant_to_association Man page Source code
variant_to_study Man page Source code
variant_to_trait Man page Source code
variants Man page Source code
variants-class Man page
variants_drop_na Man page Source code
variants_ex01 Man page
variants_ex02 Man page
variants_tbl Man page Source code
write_xlsx Man page Source code
gwasrapidd documentation built on May 29, 2024, 4:31 a.m.

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