View source: R/class-variants.R
genomic_contexts_tbl | R Documentation |
Creates a genomic contexts table.
genomic_contexts_tbl( variant_id = character(), gene_name = character(), chromosome_name = character(), chromosome_position = integer(), distance = integer(), is_mapped_gene = logical(), is_closest_gene = logical(), is_intergenic = logical(), is_upstream = logical(), is_downstream = logical(), source = character(), mapping_method = character() )
variant_id |
A character vector of variant identifiers. |
gene_name |
A character vector of gene symbols according to HUGO Gene Nomenclature (HGNC). |
chromosome_name |
A character vector of chromosome names. |
chromosome_position |
An integer vector of chromosome positions. |
distance |
An integer vector of genomic positions. |
is_closest_gene |
A logical vector. |
is_intergenic |
A logical vector. |
is_upstream |
A logical vector. |
is_downstream |
A logical vector. |
source |
A character vector of gene mapping sources. |
mapping_method |
A character vector of gene mapping methods. |
A tibble
whose columns are the named arguments
to the function.
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