genomic_contexts_tbl: Creates a genomic contexts table.

In gwasrapidd: 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

Creates a genomic contexts table.

Description

Creates a genomic contexts table.

Usage

genomic_contexts_tbl(
  variant_id = character(),
  gene_name = character(),
  chromosome_name = character(),
  chromosome_position = integer(),
  distance = integer(),
  is_mapped_gene = logical(),
  is_closest_gene = logical(),
  is_intergenic = logical(),
  is_upstream = logical(),
  is_downstream = logical(),
  source = character(),
  mapping_method = character()
)

Arguments

variant_id	A character vector of variant identifiers.
gene_name	A character vector of gene symbols according to HUGO Gene Nomenclature (HGNC).
chromosome_name	A character vector of chromosome names.
chromosome_position	An integer vector of chromosome positions.
distance	An integer vector of genomic positions.
is_closest_gene	A logical vector.
is_intergenic	A logical vector.
is_upstream	A logical vector.
is_downstream	A logical vector.
source	A character vector of gene mapping sources.
mapping_method	A character vector of gene mapping methods.

Value

A tibble whose columns are the named arguments to the function.

gwasrapidd documentation built on May 29, 2024, 4:31 a.m.