Files in gwasrapidd

'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/sysdata.rda

R/list_joins.R R/parse-utils.R R/parse-traits.R R/class-traits.R R/parse-variants.R R/get_metadata.R R/utils-pipe.R R/class-studies.R R/get_associations.R R/class-variants.R R/s4-utils.R R/request.R R/data.R R/get_studies.R R/missing.R R/gwasrapidd-package.R R/ebi_server.R R/parse-associations.R R/parse-studies.R R/browser.R R/post-traits.R R/generics.R R/tests.R R/get_traits.R R/id_mapping.R R/recursive_apply.R R/class-associations.R R/post-variants.R R/get_variants.R R/utils.R R/post-studies.R R/sure.R inst/mocks.R

inst/CITATION

inst/WORDLIST

inst/doc/gwasrapidd.Rmd

inst/doc/faq.html

inst/doc/gwasrapidd.html

inst/doc/faq.Rmd

inst/doc/bmi_variants.html

inst/doc/bmi_variants.Rmd inst/httptest/redact.R inst/httptest/request.R

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/spelling.R tests/testthat/test-sure.R tests/testthat/test-browser.R tests/testthat/test-get_studies.R tests/testthat/test-utils.R tests/testthat/test-post-traits.R tests/testthat/test-request.R tests/testthat/test-missing.R tests/testthat/test-get_traits.R tests/testthat/test-get_metadata.R tests/testthat/test-recursive-apply.R tests/testthat/test-parse-utils.R tests/testthat/helper.R tests/testthat/test-post-variants.R tests/testthat/test-list_joins.R tests/testthat/test-parse-variants.R tests/testthat/test-get_associations.R tests/testthat/test-get_variants.R tests/testthat/test-s4-utils.R tests/testthat/test-post-studies.R tests/testthat/test-generics.R tests/testthat/test-id_mapping.R tests/testthat/test-tests.R tests/testthat/test-ebi_server.R

tests/testthat/mocks/httpbin/html.html

tests/testthat/mocks/ols/efo/descendants-1ebe22.json

tests/testthat/mocks/ols/efo/descendants-414950.json

tests/testthat/mocks/ols/efo/descendants-5554d2.json

tests/testthat/mocks/ols/efo/descendants-5614ee.json

tests/testthat/mocks/gc/metadata.json

tests/testthat/mocks/gc/t/EFO_0004291.json

tests/testthat/mocks/gc/t/EFO_0005924.json

tests/testthat/mocks/gc/t/EFO_0005108.json

tests/testthat/mocks/gc/t/EFO_0005537.json

tests/testthat/mocks/gc/t/EFO_0000537.json

tests/testthat/mocks/gc/t/EFO_0005109/studies.json

tests/testthat/mocks/gc/t/EFO_0000537/studies.json

tests/testthat/mocks/gc/t/search/findByEfoTrait-f86f40.json

tests/testthat/mocks/gc/t/search/findByPubmedId-0aa3aa.json

tests/testthat/mocks/gc/t/search/findByEfoUri-7ac70f.json

tests/testthat/mocks/gc/t/search/findByPubmedId-bff249.json

tests/testthat/mocks/gc/t/search/findByPubmedId-229616.json

tests/testthat/mocks/gc/t/search/findByEfoTrait-36c8ab.json

tests/testthat/mocks/gc/t/search/findByEfoUri-9a9089.json

tests/testthat/mocks/gc/t/search/findByPubmedId-169428.json

tests/testthat/mocks/gc/t/search/findByPubmedId-effe5e.json

tests/testthat/mocks/gc/t/search/findByEfoUri-29eed3.json

tests/testthat/mocks/gc/t/search/findByEfoTrait-e4b357.json

tests/testthat/mocks/gc/t/search/findByPubmedId-ec8bd8.json

tests/testthat/mocks/gc/t/search/findByEfoUri-af4d45.json

tests/testthat/mocks/gc/t/search/findByPubmedId-109295.json

tests/testthat/mocks/gc/t/search/findByEfoTrait-9d9784.json

tests/testthat/mocks/gc/t/search/findByPubmedId-27fb7b.json

tests/testthat/mocks/gc/t/EFO_0005108/studies.json

tests/testthat/mocks/gc/t/EFO_0004291/studies.json

tests/testthat/mocks/gc/v/rs7329174.json

tests/testthat/mocks/gc/v/rs10910092.json

tests/testthat/mocks/gc/v/rs267606894.json

tests/testthat/mocks/gc/v/rs3798440.json

tests/testthat/mocks/gc/v/rs570398477.json

tests/testthat/mocks/gc/v/rs147903261.json

tests/testthat/mocks/gc/v/rs3798440/studies.json

tests/testthat/mocks/gc/v/rs3798440/associations.json

tests/testthat/mocks/gc/v/rs7329174/studies.json

tests/testthat/mocks/gc/v/rs7329174/associations.json

tests/testthat/mocks/gc/v/rs138331350/associations.R

tests/testthat/mocks/gc/v/rs138331350/studies.json

tests/testthat/mocks/gc/v/rs0/studies.R

tests/testthat/mocks/gc/v/search/findByPubmedId-0aa3aa.json

tests/testthat/mocks/gc/v/search/findByGene-408161.json

tests/testthat/mocks/gc/v/search/findByGene-e9b319.json

tests/testthat/mocks/gc/v/search/findByChromBpLocationRange-1ef6bd.json

tests/testthat/mocks/gc/v/search/findByChromBpLocationRange-d4302d.json

tests/testthat/mocks/gc/v/search/findByPubmedId-ec8bd8.json

tests/testthat/mocks/gc/v/search/findByEfoTrait-44b2a5.json

tests/testthat/mocks/gc/v/search/findByChromBpLocationRange-16cca9.json

tests/testthat/mocks/gc/v/search/findByChromBpLocationRange-dd6a06.json

tests/testthat/mocks/gc/v/search/findByEfoTrait-441287.json

tests/testthat/mocks/gc/v/rs7904579/associations.R

tests/testthat/mocks/gc/v/rs7904579/studies.json

tests/testthat/mocks/gc/v/rs7904579/associations.json

tests/testthat/mocks/gc/s/GCST000854.json

tests/testthat/mocks/gc/s/GCST000392.json

tests/testthat/mocks/gc/s/GCST002420.json

tests/testthat/mocks/gc/s/GCSTXXXXXX.R tests/testthat/mocks/gc/s/GCST0/associations.R

tests/testthat/mocks/gc/s/search/findByDiseaseTrait-c8e0fd.json

tests/testthat/mocks/gc/s/search/findByPublicationIdPubmedId-0aa3aa.json

tests/testthat/mocks/gc/s/search/findByPublicationIdPubmedId-169428.json

tests/testthat/mocks/gc/s/search/findByEfoUri-345f8d.json

tests/testthat/mocks/gc/s/search/findByEfoTrait-768a59.json

tests/testthat/mocks/gc/s/search/findByDiseaseTrait-0d1ab9.json

tests/testthat/mocks/gc/s/search/findByDiseaseTrait-bbce98.json

tests/testthat/mocks/gc/s/search/findByDiseaseTrait-24c42a.json

tests/testthat/mocks/gc/s/search/findByDiseaseTrait-08d5fb.json

tests/testthat/mocks/gc/s/search/findByEfoTrait-d9259d.json

tests/testthat/mocks/gc/s/search/findByDiseaseTrait-0937a7.json

tests/testthat/mocks/gc/s/search/findByEfoUri-29eed3.json

tests/testthat/mocks/gc/s/search/findByDiseaseTrait-101631.json

tests/testthat/mocks/gc/s/search/findByEfoTrait-44b2a5.json

tests/testthat/mocks/gc/s/search/findByEfoUri-af4d45.json

tests/testthat/mocks/gc/s/search/findByPublicationIdPubmedId-109295.json

tests/testthat/mocks/gc/s/search/findByPublicationIdPubmedId-ec8bd8.json

tests/testthat/mocks/gc/s/search/findByEfoTrait-e741dd.json

tests/testthat/mocks/gc/s/search/findByEfoUri-519a48.json

tests/testthat/mocks/gc/s/search/findByDiseaseTrait-fc2921.json

tests/testthat/mocks/gc/s/GCST002420/efoTraits.json

tests/testthat/mocks/gc/s/GCST002420/associations.json

tests/testthat/mocks/gc/s/GCST002420/snps.json

tests/testthat/mocks/gc/s/GCST001084/efoTraits.json

tests/testthat/mocks/gc/s/GCST001084/associations.json

tests/testthat/mocks/gc/s/GCST001084/snps.json

tests/testthat/mocks/gc/s/GCST001085/efoTraits.json

tests/testthat/mocks/gc/s/GCST001085/associations.json

tests/testthat/mocks/gc/s/GCST001085/snps.json

tests/testthat/mocks/gc/a/15608.json

tests/testthat/mocks/gc/a/24300113.json

tests/testthat/mocks/gc/a/24299710.json

tests/testthat/mocks/gc/a/24300097/efoTraits.json

tests/testthat/mocks/gc/a/24300097/study.json

tests/testthat/mocks/gc/a/24300097/snps.json

tests/testthat/mocks/gc/a/24299710/efoTraits.json

tests/testthat/mocks/gc/a/24299710/study.json

tests/testthat/mocks/gc/a/24299710/snps.json

tests/testthat/mocks/gc/a/search/findByPubmedId-0aa3aa.json

tests/testthat/mocks/gc/a/search/findByPubmedId-bff249.json

tests/testthat/mocks/gc/a/0/snps.R

tests/testthat/mocks/gc/a/24299759/efoTraits.json

tests/testthat/mocks/gc/a/24299759/study.json

tests/testthat/mocks/gc/a/24299759/snps.json

tests/testthat/mocks/gc/a/15608/efoTraits.json

tests/testthat/mocks/gc/a/15608/study.json

tests/testthat/mocks/gc/a/15608/snps.json

vignettes/gwasrapidd.Rmd

vignettes/faq.Rmd.orig

vignettes/gwasrapidd.bib

vignettes/gwasrapidd.Rmd.orig

vignettes/faq.Rmd vignettes/precompile.R

vignettes/bmi_variants.Rmd.orig

vignettes/bmi_variants.Rmd

data/variants_ex01.rda

data/cytogenetic_bands.rda

data/variants_ex02.rda

data/traits_ex01.rda

data/studies_ex01.rda

data/associations_ex02.rda

data/associations_ex01.rda

data/studies_ex02.rda

data/traits_ex02.rda

man/studies.Rd man/get_variants_by_gene_name.Rd man/gc_get.Rd man/variants.Rd man/get_variants_by_study_id.Rd man/get_studies_by_full_pvalue_set.Rd man/get_traits_by_efo_uri.Rd man/get_associations_by_variant_id.Rd man/get_studies_by_efo_uri.Rd man/get_associations_by_study_id.Rd man/get_variants_all.Rd man/get_traits_by_efo_trait.Rd man/get_studies_by_variant_id.Rd man/get_traits_by_pubmed_id.Rd man/get_traits.Rd man/get_variants_by_genomic_range.Rd man/peel_off_embedded.Rd man/subset-variants.Rd man/open_in_gwas_catalog.Rd man/empty_to_na.Rd man/risk_alleles_tbl.Rd man/equal_length.Rd man/is_empty_str.Rd man/association_to_trait.Rd man/variants_tbl.Rd man/get_metadata.Rd man/ensembl_ids_tbl.Rd man/s4_to_list.Rd man/get_studies_by_efo_trait.Rd man/study_to_association.Rd man/v_entrez_ids_tbl.Rd man/allele_name.Rd man/tws.Rd man/studies_tbl.Rd man/variant_to_study.Rd man/is_efo_id2.Rd man/gwasrapidd-package.Rd man/get_variants.Rd man/filter_by_id.Rd man/gc_request_all.Rd man/cytogenetic_bands.Rd man/get_associations_by_efo_trait.Rd man/genotyping_techs_tbl.Rd man/loci_tbl.Rd man/is_rs_id.Rd man/associations-class.Rd man/get_variants_by_association_id.Rd man/trait_to_variant.Rd man/open_in_pubmed.Rd man/get_associations_by_pubmed_id.Rd man/publications_tbl.Rd man/extract_association_id.Rd man/exists_variant.Rd man/study_to_trait.Rd man/get_studies_by_reported_trait.Rd man/gc_examples.Rd man/trait_to_study.Rd man/skip_if_testing_is_fast.Rd man/association_to_variant.Rd man/object_type_from_url.Rd man/study_to_variant.Rd man/ancestries_tbl.Rd man/get_variants_by_efo_trait.Rd man/v_ensembl_ids_tbl.Rd man/normalise_obj.Rd man/missing_to_na.Rd man/get_associations_all.Rd man/sure.Rd man/filter_variants_by_standard_chromosomes.Rd man/get_traits_all.Rd man/get_variants_by_cytogenetic_band.Rd man/variant_name.Rd man/get_traits_by_association_id.Rd man/metadata_lst.Rd man/is_association_id.Rd man/open_in_gtex.Rd man/is_embedded.Rd man/get_associations_by_efo_id.Rd man/is_ebi_reachable.Rd man/variants_drop_na.Rd man/get_studies_by_user_requested.Rd man/variant_to_trait.Rd man/get_studies_by_study_id.Rd man/get_traits_by_efo_id.Rd man/ancestral_groups_tbl.Rd man/get_traits_by_study_id.Rd man/associations_tbl.Rd man/get_studies_by_pubmed_id.Rd man/get_studies_by_association_id.Rd man/associations.Rd man/get_variants_by_efo_id.Rd man/pipe.Rd man/studies_drop_na.Rd man/contains_question_mark.Rd man/get_studies.Rd man/list_to_s4.Rd man/set_testing_fast.Rd man/traits.Rd man/variants-class.Rd man/is_paginated.Rd man/get_variants_by_pubmed_id.Rd man/set_testing_slow.Rd man/variant_to_association.Rd man/subset-traits.Rd man/association_to_study.Rd man/subset-studies.Rd man/get_variants_by_reported_trait.Rd man/traits_drop_na.Rd man/gc_request.Rd man/recursive_apply.Rd man/reported_genes_tbl.Rd man/bind.Rd man/trait_to_association.Rd man/entrez_ids_tbl.Rd man/is_pubmed_id.Rd man/traits-class.Rd man/is_efo_id.Rd man/get_child_efo.Rd man/is_study_id.Rd man/associations_drop_na.Rd man/get_associations_by_association_id.Rd man/platforms_tbl.Rd man/countries_tbl.Rd man/studies-class.Rd man/get_studies_by_efo_id.Rd man/cytogenetic_band_to_genomic_range.Rd man/open_in_dbsnp.Rd man/genomic_contexts_tbl.Rd man/get_associations.Rd man/child_efo_ids.Rd man/setop.Rd man/get_variants_by_variant_id.Rd man/is_human_chromosome.Rd man/n.Rd man/get_studies_all.Rd man/subset-associations.Rd man/lstjoin.Rd man/add_object_tier.Rd

man/figures/logo.png

man/figures/get_fns.png

man/figures/get_criteria.png

man/figures/child_trait.png

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man/figures/cintesis.svg

gwasrapidd documentation built on Dec. 28, 2022, 2:16 a.m.