gc_request_all: Request a paginated GWAS Catalog REST API endpoint

In gwasrapidd: 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

Request a paginated GWAS Catalog REST API endpoint

Description

Performs a GET request on the specified resource_url and all its pages.

Usage

gc_request_all(
  resource_url = "/",
  base_url = gwas_rest_api_base_url,
  page_size = 20L,
  verbose = FALSE,
  warnings = TRUE,
  progress_bar = TRUE
)

Arguments

resource_url	Endpoint URL. The endpoint is internally appended to the base_url. It should start with a forward slash (/).
base_url	The GWAS REST API base URL (one should not need to change its default value).
page_size	Page parameter used in the URL endpoint.
verbose	Whether to be chatty.
warnings	Whether to print warnings.
progress_bar	Whether to show a progress bar as the paginated resources are retrieved.

Value

A list four named elements:

url

The URL endpoint.

response_code

HTTP status code.

status

A string describing the status of the response obtained. It is "OK" if everything went OK or some other string describing the problem otherwise.

content

The parsed JSON as a nested list, as returned by jsonlite::fromJSON.

gwasrapidd documentation built on May 29, 2024, 4:31 a.m.