associations_tbl: Creates an associations table.
In gwasrapidd: 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

associations_tbl

R Documentation

Creates an associations table.

Description

Creates an associations table.

Usage

associations_tbl(
  association_id = character(),
  pvalue = double(),
  pvalue_description = character(),
  pvalue_mantissa = integer(),
  pvalue_exponent = integer(),
  multiple_snp_haplotype = logical(),
  snp_interaction = logical(),
  snp_type = character(),
  risk_frequency = double(),
  standard_error = double(),
  range = character(),
  or_per_copy_number = double(),
  beta_number = double(),
  beta_unit = character(),
  beta_direction = character(),
  beta_description = character(),
  last_mapping_date = lubridate::ymd_hms(),
  last_update_date = lubridate::ymd_hms()
)

Arguments

`association_id`	A character vector of association identifiers.
`pvalue`	A numeric vector of p-values.
`pvalue_description`	A character vector of p-value context descriptions.
`pvalue_mantissa`	An integer vector of p-value mantissas.
`pvalue_exponent`	An integer vector of p-value exponents.
`multiple_snp_haplotype`	A logical vector.
`snp_interaction`	A logical vector.
`snp_type`	A character vector indicating SNP novelty: 'novel' or 'known'.
`standard_error`	A numeric vector of standard errors.
`range`	A character vector of free text descriptions of confidence intervals.
`or_per_copy_number`	A numeric vector of odds ratios.
`beta_number`	A numeric vector of beta coefficients.
`beta_unit`	A character vector of beta coefficient units.
`beta_direction`	A character vector of beta coefficient directions.
`beta_description`	A character vector of beta descriptions.
`last_mapping_date`	A `POSIXct` object indicating last time this association was mapped to Ensembl.
`last_update_date`	A `POSIXct` object indicating the last time the associations have been updated.