gwerAM: Controlling the genome-wide type I error rate in association mapping experiments

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This package provides functions to calculate the significance threshold for controlling the type I error rate in mixed-model association mapping analyses.

Author
Benjamin Stich <stich@mpipz.mpg.de>, Bettina Mueller <b.mueller@uni-hohenheim.de>, Hans-Peter Piepho <piepho@uni-hohenheim.de>
Date of publication
2012-10-29 08:58:55
Maintainer
Benjamin Stich <stich@mpipz.mpg.de>
License
GPL (>= 2)
Version
1.0
URLs

View on CRAN

Man pages

gwerAM
Calculates signifance thresholds for mixed-model association...
gwerAM-internal
Internal gwerAM Functions
maizeA
Numerator relationship matrix required for "gwerAM()"
maizeQ
Population structure matrix required for "gwerAM()"
maizevarianceA
Genotypic variance required for "gwerAM()"
maizevarianceE
Error variance required for "gwerAM()"
maizeW
Marker matrix required for "gwerAM()"

Files in this package

gwerAM
gwerAM/data
gwerAM/data/maizevarianceA.rda
gwerAM/data/maizeA.rda
gwerAM/data/maizeW.rda
gwerAM/data/maizeQ.rda
gwerAM/data/maizevarianceE.rda
gwerAM/NAMESPACE
gwerAM/man
gwerAM/man/maizeQ.Rd
gwerAM/man/maizevarianceE.Rd
gwerAM/man/maizevarianceA.Rd
gwerAM/man/maizeA.Rd
gwerAM/man/gwerAM-internal.Rd
gwerAM/man/gwerAM.Rd
gwerAM/man/maizeW.Rd
gwerAM/TITEL
gwerAM/DESCRIPTION
gwerAM/MD5
gwerAM/R
gwerAM/R/gwerAM.R