maizeQ: Population structure matrix required for "gwerAM()"

In gwerAM: Controlling the genome-wide type I error rate in association mapping experiments

Description

This matrix contains the population structure information required for gwerAM.

Usage

data(maizeQ)

Format

The matrix has five columns, one for each subpopulation. Each row gives the probability that the corresponding genotype belongs to the corresponding subpopulations. The data set comprises information from 277 diverse maize inbreds which have been used in the study of Yu et al. (2006).

References

Yu, J., Pressoir, G., Briggs, W.H., Bi, I.V., Yamasaki, M., Doebley, J.F., McMullen, M.D., Gaut, B.S., Holland, J.B., Kresovich, S., and Buckler, E.S. 2006. A unified mixed-model method for association mapping accounting for multiple levels of relatedness. Nature Genetics 38: 203-208.

gwerAM documentation built on May 2, 2019, 6:04 a.m.