maizeW: Marker matrix required for "gwerAM()"

In gwerAM: Controlling the genome-wide type I error rate in association mapping experiments

Description

This matrix contains the molecular marker information required for gwerAM.

Usage

data(maizeW)

Format

The matrix has 553 columns, one for each single nucleotide polymorphism marker. Each row gives the genotypic information for one of the 277 diverse maize inbred lines (Yu et al. 2006). Missing data is coded with NA. Multiallelic markers are coded similarly to biallelic markers with integers indicating which allele being present at each marker-genotype combination.

References

Yu, J., Pressoir, G., Briggs, W.H., Bi, I.V., Yamasaki, M., Doebley, J.F., McMullen, M.D., Gaut, B.S., Holland, J.B., Kresovich, S., and Buckler, E.S. 2006. A unified mixed-model method for association mapping accounting for multiple levels of relatedness. Nature Genetics 38: 203-208.

gwerAM documentation built on May 2, 2019, 6:04 a.m.