buildAnalysesPlan | Build a plan for data analyses |
buildItem | Build a model suitable for a single item genome-wide... |
buildOneFac | Build a model suitable for a single factor genome-wide... |
buildOneFacRes | Build a model suitable for a single factor residual... |
buildTwoFac | Build a model suitable for a two factor genome-wide... |
GWAS | Run a genome-wide association study (GWAS) using the provided... |
gwsem-package | Genome-wide Structural Equation Modeling |
isSuspicious | Determine which results are suspicious |
loadResults | Load GWAS results into a single data.frame |
loadSuspicious | Load suspicious GWAS results into a single data.frame |
numAvailableRecords | Probe the number of available records |
plot.gwsemResult | Creates a Manhattan plot |
prepareComputePlan | Return a suitable compute plan for a genome-wide association... |
setupExogenousCovariates | Set up exogenous model covariates |
setupThresholds | Set up thresholds for ordinal indicators |
signif | Compute Z score and p-value for parameter of focus |
signifGxE | Compute Z score and p-value for parameter of focus at... |
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