MD5
NEWS
README.md
NAMESPACE
DESCRIPTION
R/model.R
R/report.R
R/package.R
src/pgenlib_misc.h
src/huf_compress.c
src/Makevars
src/bgen.cpp
src/loader.cpp
src/init.cpp
src/huf_decompress.c
src/zbuff_compress.c
src/zstd_compress.c
src/sqlite3.c
src/db_wrapper.cpp
src/plink2_base.h
src/xxhash.c
src/zbuff_decompress.c
src/pgenlib_read.h
src/entropy_common.c
src/openmx.h
src/pgenlib_read.cc
src/pgenlib_misc.cc
src/plink2_base.cc
src/LoadDataAPI.h
src/zstd_common.c
src/plink2_bits.cc
src/fse_compress.c
src/plink2_bits.h
src/fse_decompress.c
src/openmx.cpp
src/zstd_decompress.c
src/disable_plink.h
src/include/genfile/types.hpp
src/include/genfile/zlib.hpp
src/include/genfile/MissingValue.hpp
src/include/genfile/bgen/Query.hpp
src/include/genfile/bgen/IndexQuery.hpp
src/include/genfile/bgen/View.hpp
src/include/genfile/bgen/bgen.hpp
src/include/sqlite3/sqlite3ext.h
src/include/sqlite3/sqlite3.h
src/include/db/sqlite3.hpp
src/include/db/SQLite3Error.hpp
src/include/db/SQLite3Statement.hpp
src/include/db/Error.hpp
src/include/db/Transaction.hpp
src/include/db/SQLite3Connection.hpp
src/include/db/Connection.hpp
src/include/db/SQLStatement.hpp
src/include/zstd-1.1.0/zstd.h
src/include/zstd-1.1.0/legacy/zstd_v01.h
src/include/zstd-1.1.0/legacy/zstd_v03.h
src/include/zstd-1.1.0/legacy/zstd_v05.h
src/include/zstd-1.1.0/legacy/zstd_v06.h
src/include/zstd-1.1.0/legacy/zstd_v07.h
src/include/zstd-1.1.0/legacy/zstd_v04.h
src/include/zstd-1.1.0/legacy/zstd_legacy.h
src/include/zstd-1.1.0/legacy/zstd_v02.h
src/include/zstd-1.1.0/dictBuilder/divsufsort.h
src/include/zstd-1.1.0/dictBuilder/zdict.h
src/include/zstd-1.1.0/common/xxhash.h
src/include/zstd-1.1.0/common/zbuff.h
src/include/zstd-1.1.0/common/huf.h
src/include/zstd-1.1.0/common/error_private.h
src/include/zstd-1.1.0/common/bitstream.h
src/include/zstd-1.1.0/common/error_public.h
src/include/zstd-1.1.0/common/mem.h
src/include/zstd-1.1.0/common/fse.h
src/include/zstd-1.1.0/common/zstd_internal.h
src/include/zstd-1.1.0/compress/zstd_opt.h
inst/extdata/example.fam
inst/extdata/group1.bed
inst/extdata/example.bgen.bgi
inst/extdata/group2.fam
inst/extdata/test2.pgen
inst/extdata/example.pgen
inst/extdata/example.bgen
inst/extdata/README
inst/extdata/example.sample
inst/extdata/example.pvar
inst/extdata/test2.pvar
inst/extdata/group1.bim
inst/extdata/example.psam
inst/extdata/group2.bed
inst/extdata/example.bim
inst/extdata/group1.fam
inst/extdata/group2.bim
inst/extdata/example.bed
inst/extdata/test2.psam
build/gwsem.pdf
tests/testthat.R
tests/testthat/test-formats.R
tests/testthat/test-covariate.R
tests/testthat/test-model.R
tests/testthat/test-rowFilter.R
tests/testthat/test-multigroup.R
tests/testthat/test-gxe.R
tools/rox
tools/build
tools/check
tools/rbgen.R
tools/test
tools/vignetter
tools/bench.R
tools/pgenlib.R
tools/test.R
tools/travis/script
man/buildAnalysesPlan.Rd
man/numAvailableRecords.Rd
man/gwsem-package.Rd
man/buildOneFac.Rd
man/signif.Rd
man/setupThresholds.Rd
man/loadSuspicious.Rd
man/signifGxE.Rd
man/prepareComputePlan.Rd
man/setupExogenousCovariates.Rd
man/buildItem.Rd
man/loadResults.Rd
man/GWAS.Rd
man/plot.gwsemResult.Rd
man/buildTwoFac.Rd
man/buildOneFacRes.Rd
man/isSuspicious.Rd
man/figures/resid.jpg
man/figures/lifecycle-stable.svg
man/figures/lifecycle-soft-deprecated.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-deprecated.svg
man/figures/twoFactor.jpg
man/figures/singleFactor.jpg
man/figures/lifecycle-retired.svg
man/figures/lifecycle-maturing.svg