loadSuspicious: Load suspicious GWAS results into a single data.frame

In gwsem: Genome-Wide Structural Equation Modeling

Description

\lifecycle

deprecated See example for how to change your code.

Usage

loadSuspicious(
  path,
  focus,
  ...,
  extraColumns = c(),
  signAdj = NULL,
  moderatorLevel = NULL
)

Arguments

path	vector of paths to result files created by GWAS
focus	parameter name on which to calculate a Z score and p-value
...	Not used. Forces remaining arguments to be specified by name.
extraColumns	character vector of additional columns to load
signAdj	name of column. Value of focus parameter is multiplied by the sign of the named column
moderatorLevel	see details

Examples

tdir <- tempdir()
dir <- system.file("extdata", package = "gwsem")
pheno <- data.frame(anxiety=rnorm(500))
m1 <- buildItem(pheno, 'anxiety')
GWAS(m1, file.path(dir,"example.bgen"),
    file.path(tdir,"out.log"))
r1 <- loadResults(file.path(tdir,"out.log"), "snp_to_anxiety")
r1[isSuspicious(r1, "snp_to_anxiety"),]

gwsem documentation built on Jan. 18, 2022, 1:09 a.m.