Description Usage Arguments Value See Also Examples
Uses the qqman package to create a Manhattan plot.
1 2 |
x |
the result of loadResults |
y |
an extra argument that should not be used |
... |
arguments forwarded to manhattan |
A Manhattan plot.
Other reporting:
isSuspicious()
,
loadResults()
,
signifGxE()
,
signif()
1 2 3 4 5 6 7 8 | tdir <- tempdir()
dir <- system.file("extdata", package = "gwsem")
pheno <- data.frame(anxiety=rnorm(500))
m1 <- buildItem(pheno, 'anxiety')
GWAS(m1, file.path(dir,"example.bgen"),
file.path(tdir,"out.log"))
got <- loadResults(file.path(tdir,"out.log"), "snp_to_anxiety")
plot(got)
|
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