plot.gwsemResult: Creates a Manhattan plot

In gwsem: Genome-Wide Structural Equation Modeling

Description

Uses the qqman package to create a Manhattan plot.

Usage

## S3 method for class 'gwsemResult'
plot(x, y, ...)

Arguments

x	the result of loadResults
y	an extra argument that should not be used
...	arguments forwarded to manhattan

Value

A Manhattan plot.

See Also

Other reporting: isSuspicious(), loadResults(), signifGxE(), signif()

Examples

tdir <- tempdir()
dir <- system.file("extdata", package = "gwsem")
pheno <- data.frame(anxiety=rnorm(500))
m1 <- buildItem(pheno, 'anxiety')
GWAS(m1, file.path(dir,"example.bgen"),
    file.path(tdir,"out.log"))
got <- loadResults(file.path(tdir,"out.log"), "snp_to_anxiety")
plot(got)

gwsem documentation built on Jan. 18, 2022, 1:09 a.m.