residuals.haplo.glm: Accessing residuals for haplo.glm fit

In haplo.stats: Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous

Accessing residuals for haplo.glm fit

Description

Access the residuals from a haplo.glm model fit

Usage

## S3 method for class 'haplo.glm'
residuals(object, type=c("deviance", "pearson",
                                "working", "response"), ...)

Arguments

object	A haplo.glm object
type	Type of residuals to return. Options are "deviance" (default), "pearson", "working", and "response". Partial residuals not supported in this method.
...	Optional arguments

Details

Many of the subjects in a haplo.glm fit are expanded in the model matrix with weights used to reflect the posterior probability of the subject's haplotype pairs given their genotype. The working residuals within the fitted object are from this expanded model matrix, and the residuals in this method are calculated from the weighted fitted value for the subject across all their haplotype pairs.

Value

Residuals for each person in the model.

See Also

haplo.glm, residuals.glm, fitted.haplo.glm

haplo.stats documentation built on May 29, 2024, 9:53 a.m.