seqhap.dat: Simulated data for seqhap examples

In haplo.stats: Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous

Simulated data for seqhap examples

Description

Simulated data set for the demonstration of seqhap functionality. Contains one column for disease status and columns representing 10 SNP loci with a known association. seqhap.pos contains a column for chromosome position, as required by seqhap.

Usage

data(seqhap.dat)
data(seqhap.pos)

Format

A data frame with 1000 observations on the following 21 variables.

disease

numeric, indicator of disease status 0=no, 1=yes

m1.1

first allele of genotype

m1.2

second allele of genotype

m2.1

first allele of genotype

m2.2

second allele of genotype

m3.1

first allele of genotype

m3.2

second allele of genotype

m4.1

first allele of genotype

m4.2

second allele of genotype

m5.1

first allele of genotype

m5.2

second allele of genotype

m6.1

first allele of genotype

m6.2

second allele of genotype

m7.1

first allele of genotype

m7.2

second allele of genotype

m8.1

first allele of genotype

m8.2

second allele of genotype

m9.1

first allele of genotype

m9.2

second allele of genotype

m10.1

first allele of genotype

m10.2

second allele of genotype

References

Yu Z, Schaid DJ (2007) Sequantial haplotype scan methods for association analysis. Gen Epi, in print.

Examples

data(seqhap.dat)

haplo.stats documentation built on Jan. 22, 2023, 1:40 a.m.