extractplate: Extract plate

In highSCREEN: High-Throughput Screening for Plate Based Essays

Description

description

Usage

extractplate(dat0, dat1, plate, replicate)

Arguments

dat0	A list consisting of the following elements for the t0-specific data set: Replicate1: Data frame containing the first triplicate and 4 additional columns specifying the controls and their plate locations. Replicate2: Data frame containing the second triplicate and 4 additional columns specifying the controls and their plate locations. Replicate3: Data frame containing the third triplicate and 4 additional columns specifying the controls and their plate locations.
dat1	A list consisting of the following elements for the t1-specific data set: Replicate1: Data frame containing the first triplicate and 4 additional columns specifying the controls and their plate locations. Replicate2: Data frame containing the second triplicate and 4 additional columns specifying the controls and their plate locations. Replicate3: Data frame containing the third triplicate and 4 additional columns specifying the controls and their plate locations.
plate	Specifies which of the 4 plates to be extracted.
replicate	Specfies which replicate to be extracted.

Value

This function returns a list consisting of the following elements:

dat0	Data frame containing the t0-specific plate of compounds and controls.
dat1	Data frame containing the t1-specific plate of compounds and controls.

Examples

set.seed(1234)
nc = 24
nr = 16

# create 1st replicate of data matrix with compounds and controls
r1 = matrix(abs(rnorm(nr*nc)), nr, nc)

# create 2nd replicate of data matrix with compounds and controls
r2 = matrix(abs(rnorm(nr*nc)), nr, nc)

# create 3rd replicate of data matrix with compounds and controls
r3 = matrix(abs(rnorm(nr*nc)), nr, nc)

# combine all replicate to create t0-specific data set
replicates_t0 = list(r1, r2, r3)
names(replicates_t0) = c("R1", "R2", "R3")

# create 1st replicate of data matrix with compounds and controls
r1 = matrix(abs(rnorm(nr*nc)), nr, nc)

# create 2nd replicate of data matrix with compounds and controls
r2 = matrix(abs(rnorm(nr*nc)), nr, nc)

# create 3rd replicate of data matrix with compounds and controls
r3 = matrix(abs(rnorm(nr*nc)), nr, nc)

# combine all replicate to create t1-specific data set
replicates_t1 = list(r1, r2, r3)
names(replicates_t1) = c("R1", "R2", "R3")

# extract plate 3, replicate 2
extractplate(replicates_t0, replicates_t1, plate=3, replicate=2)

highSCREEN documentation built on Feb. 12, 2021, 5:09 p.m.