Description Usage Arguments Details Value Author(s) References See Also Examples
The Jaccard-type overlap quantifies the effective proportion of OTUs or lineages in a system that are shared across all subsystems. Hence, this metric quantifies overlap from the perspective of the overall system. Its corresponding dissimilarity (1 - UqN) quantifies the effective proportion of nonshared OTUs or lineages in the overall system. UqN is integrated in the functions beta_dis() and pair_dis().
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beta |
A beta diversity value based on Hill numbers. |
qvalue |
The q value used to compute the beta diversity. It needs to be a positive number, usually between 0 and 5, but most commonly 0, 1 or 2. It can be an integer or contain decimals. |
N |
An integer indicating sample size, the number of sampling units to be used to compute the similarity measure. |
Jaccard-type overlap
A Jaccard-type overlap value
Antton Alberdi, anttonalberdi@gmail.com
Alberdi, A., Gilbert, M.T.P. (2019). A guide to the application of Hill numbers to DNA-based diversity analyses. Molecular Ecology Resources, 19, 804-817.
Chao, A., Chiu, C.H., & Hsieh, T. C. (2012). Proposing a resolution to debates on diversity partitioning. Ecology, 93, 2037-2051.
Jost, L. (2007). Partitioning diversity into independent alpha and beta components. Ecology, 88, 2427-2439.
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