tree_depth: Tree depth

In hilldiv: Integral Analysis of Diversity Based on Hill Numbers

Description

Computes phylogenetic tree depth based from a phylogenetic tree and a vector of (relative) abundances.

Usage

tree_depth(tree, abund)

Arguments

tree	A phylogenetic tree of class 'phylo'. The tip labels must match the row names in the OTU table. Use the function match_data() if the OTU names do not match.
abund	A vector or a matrix/data.frame indicating the relative abundances of one or multiple samples, respectively. If a matrix/data.frame is provided, columns must refer to samples and rows to OTUs.

Details

Tree depth

Value

A tree depth value

Author(s)

Antton Alberdi, [e-mail]

See Also

div_part, gamma_div, match_data

Examples

data(bat.diet.otutable)
data(bat.diet.tree)
tree_depth(tree=bat.diet.tree,abund=bat.diet.otutable)
tree_depth(bat.diet.tree,bat.diet.otutable)

hilldiv documentation built on Oct. 1, 2019, 5:04 p.m.