match_data: Match data

In hilldiv: Integral Analysis of Diversity Based on Hill Numbers

Description

Filter count tables and OTU/ASV phylogenetic trees to match OTUs/ASVs present in both data files..

Usage

match_data(countable, tree, output)

Arguments

countable	A count table (matrix/data.frame) indicating the absolute or relative OTU/ASV abundances of multiple samples. Columns must refer to samples and rows to OTUs/ASVs.
tree	An ultrametic tree of class 'phylo'.
output	Whether to output a filtered count table ('countable') or a filtered OTU tree ('tree').

Details

Match data

Author(s)

Antton Alberdi, [e-mail]

See Also

hill_div, index_div

Examples

data(bat.diet.otutable)
data(bat.diet.tree)
match_data(bat.diet.otutable,bat.diet.tree,output="countable")
match_data(bat.diet.otutable,bat.diet.tree,output="tree")

hilldiv documentation built on Oct. 1, 2019, 5:04 p.m.