depth_cov: Depth coverage assessment
In hilldiv: Integral Analysis of Diversity Based on Hill Numbers
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Coverage of the estimated Hill numbers at different orders of diversity.
Usage
1
depth_cov(abund, qvalue)
Arguments
abund
A vector or a matrix/data.frame indicating the relative abundances of one or multiple samples, respectively. If a matrix/data.frame is provided, columns must refer to samples and rows to OTUs.
qvalue
A positive integer or decimal number (>=0), usually between 0 and 3.
Details
Depth coverage assessment
Value
A matrix with observed diversity, estimated diversities and coverage
Author(s)
Antton Alberdi, anttonalberdi@gmail.com
References
Chao, A. & Jost, L. (2015) Estimating diversity and entropy profiles via discovery rates of new species. Methods in Ecology and Evolution, 6, 873-882.
Jost, L. (2006). Entropy and diversity. Oikos, 113, 363-375.
Hill, M. O. (1973). Diversity and evenness: a unifying notation and its consequences. Ecology, 54, 427-432.
See Also
Examples
1
2
3
data(bat.diet.otutable)
depth_cov(bat.diet.otutable,0)
depth_cov(bat.diet.otutable,qvalue=1)
hilldiv documentation built on Oct. 1, 2019, 5:04 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Coverage of the estimated Hill numbers at different orders of diversity.
Usage
1 | depth_cov(abund, qvalue)
|
Arguments
abund |
A vector or a matrix/data.frame indicating the relative abundances of one or multiple samples, respectively. If a matrix/data.frame is provided, columns must refer to samples and rows to OTUs. |
qvalue |
A positive integer or decimal number (>=0), usually between 0 and 3. |
Details
Depth coverage assessment
Value
A matrix with observed diversity, estimated diversities and coverage
Author(s)
Antton Alberdi, anttonalberdi@gmail.com
References
Chao, A. & Jost, L. (2015) Estimating diversity and entropy profiles via discovery rates of new species. Methods in Ecology and Evolution, 6, 873-882.
Jost, L. (2006). Entropy and diversity. Oikos, 113, 363-375.
Hill, M. O. (1973). Diversity and evenness: a unifying notation and its consequences. Ecology, 54, 427-432.
See Also
Examples
1 2 3 | data(bat.diet.otutable)
depth_cov(bat.diet.otutable,0)
depth_cov(bat.diet.otutable,qvalue=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.