fitted.hisemit: Extract fitted values from a hisemit object

Description Usage Arguments Details Value Author(s) References See Also

View source: R/EM.Newton.support.R

Description

Extract fitted values from a hisemit object

Usage

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## S3 method for class 'hisemit'
fitted(object, fitted.type = c("lfdr", "fpp", "pi0", "f"), 
        gene.list, component, ...)

Arguments

object

A hisemit object

fitted.type

One of c("lfdr", "fpp", "pi0", "f"). See details.

gene.list

Not implemented

component

Specifying which additive component is extracted. See details.

...

Not used.

Details

For the fitted.type argument,

When fitted.type='f', the component specifies which component of the fitted smooth function to be extracted.
If component is missing, the overal function is returned.
If component='intercept', only the intercept term is returned.
If component is numeric, then it specifies the smooth function corresponding to which covariate to be extracted.

Value

A numeric vector

Author(s)

Long Qu [email protected]

References

Long Qu, Dan Nettleton, Jack Dekkers (2012) A hierarchical semiparametric model for incorporating inter-gene relationship information for analysis of genomic data. Biometrics, 68(4):1168-1177

See Also

plot.hisemit, fitted.hisemit, coef.hisemit, vcov.hisemit, residuals.hisemit, logLik.hisemit, confint.hisemit, print.hisemit, penLik.EMNewton


hisemi documentation built on July 9, 2017, 9:02 a.m.