Description Usage Arguments Details Value Examples
Matrix containing linkage disequilibrium between marker pairs on maternal gametes is set up by counting haplotypes frequencies.
1 | LDdam(inMat, pos_chr)
|
inMat |
[MATRIX] The maternal HAPLOTYPE matrix. |
pos_chr |
[LIST] The marker positions in Morgan on chromosomes. |
The function generates a block diagonal sparse matrix based on Matrix::bdiag. Use as.matrix() to obtain a regular one.
Dd
(p x p) matrix of maternal LD
1 2 3 4 |
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