Man pages for hsrecombi
Estimation of Recombination Rate and Maternal LD in Half-Sibs
| bestmapfun | Best fitting genetic-map function |
| checkCandidates | Candidates for misplacement |
| countNumbers | Count genotype combinations at 2 SNPs |
| daughterSire | targetregion: allocation of paternal half-sib families |
| editraw | Editing results of hsrecombi |
| felsenstein | Felsenstein's genetic map function |
| geneticPosition | Estimation of genetic position |
| genotype.chr | targetregion: progeny genotypes |
| haldane | Haldane's genetic map function |
| hapSire | targetregion: sire haplotypes |
| hsrecombi | Estimation of recombination rate and maternal LD |
| karlin | Liberman and Karlin's genetic map function |
| kosambi | Kosambi's genetic map function |
| LDHScpp | Expectation Maximisation (EM) algorithm |
| loglikfun | Calculate log-likelihood function |
| makehap | Make list of imputed sire haplotypes |
| makehaplist | Make list of sire haplotypes |
| makehappm | Make list of imputed haplotypes and recombination rate |
| map.chr | targetregion: physical map |
| rao | System of genetic-map functions |
| rao-inverse | Approximation to inverse of Rao's system of map functions |
| startvalue | Start value for maternal allele and haplotype frequencies |
| targetregion | Description of the targetregion data set |
