ImmunoChipB37: ImmunoChip annotation object (built-in)

In humarray: Simplify Analysis and Annotation of Human Microarray Datasets

Description

Dataset. This object contains chromosome, position, chip SNP labels, SNP rs-ids, for immunochip, plus allele codes based on a UVA/Sanger T1D dataset, which should be updated for use with a different dataset with different allele coding (however the position and rs-id information should still be applicable. The data is in build 37 coordinates as a ChipInfo object, but using functions convTo36 or convTo38 from the humarray package can easily convert this to build 36 or 38.

Format

An object of class GRanges

See Also

convTo38 convTo36 A1

Examples

data(ImmunoChipB37)
ImmunoChipB36 <- convTo36(ImmunoChipB37) 

humarray documentation built on Nov. 20, 2017, 1:05 a.m.