iC10: A Copy Number and Expression-Based Classifier for Breast Tumours

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Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.

Author
Oscar M Rueda
Date of publication
2015-09-23 08:05:08
Maintainer
Oscar M. Rueda <Oscar.Rueda@cruk.cam.ac.uk>
License
GPL-3
Version
1.1.3

View on CRAN

Man pages

compare
Compare results of the iC10 classifier
getCNfeatures
Internal function for matching copy number features.
getExpfeatures
Internal function for matching expression features.
goodnessOfFit
Goodness of fit results of the iC10 classifier
iC10
A copy number and expression-based classfier for breast...
iC10-package
A copy number and expression-based classifier for breast...
matchFeatures
Matching features from the classifier to the test data.
normalizeFeatures
Normalization of expression features
plot.iC10
Plot results of the iC10 classifier
print.iC10
Print results of the iC10 classifier
summary.iC10
Summary results of the iC10 classifier

Files in this package

iC10
iC10/NAMESPACE
iC10/NEWS
iC10/R
iC10/R/getCNfeatures.R
iC10/R/getExpfeatures.R
iC10/R/plot.iC10.R
iC10/R/normalizeFeatures.R
iC10/R/print.iC10.R
iC10/R/iC10.R
iC10/R/matchFeatures.R
iC10/R/goodnessOfFit.R
iC10/R/compare.R
iC10/R/summary.iC10.R
iC10/MD5
iC10/DESCRIPTION
iC10/man
iC10/man/print.iC10.Rd
iC10/man/getCNfeatures.Rd
iC10/man/plot.iC10.Rd
iC10/man/goodnessOfFit.Rd
iC10/man/normalizeFeatures.Rd
iC10/man/summary.iC10.Rd
iC10/man/compare.Rd
iC10/man/iC10-package.Rd
iC10/man/iC10.Rd
iC10/man/matchFeatures.Rd
iC10/man/getExpfeatures.Rd