Plot results of the iC10 classifier, in two different formats: either the signatures of the training set or the signatures of the new data classified.
An object of
Number of sample to plot (if
An object result to call to
Additional arguments passed to
Two types of plots can be produced. If
newdata is NULL, a panel 6x2 is drawn with the 10 profiles
of the signatures of the training set and the profile of the features of
sample.name and the
distribution of the probabilities of classification to each iC10 for that sample.
newdata is not nutll, a panel 6x2 (with the 11th panel empty) is drawn with the 10 profiles of
newdata samples and their distribution into the clusters.
The features are sorted by type: copy number (if available) are drawn in grey, and then expression, each
of them are sorted by genomic position.
A 6x2 plot is produced.
Oscar M Rueda
Ali HR et al. Genome-driven integrated classification of breast cancer validated in over 7,500 samples. Genome Biology 2014; 15:431. Curtis et al. The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature 2012; 486:346-352.
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