getCNfeatures: Internal function for matching copy number features.

In iC10: A Copy Number and Expression-Based Classifier for Breast Tumours

Internal function for matching copy number features.

Description

This function should not be called directly

Usage

getCNfeatures(CN, Probes, Map, by.feat, ref, Synonyms)

Arguments

CN	CN features matrix
Probes	Vector with the probes to match
Map	data.frame with the genomic description of the features to match
by.feat	"probe" or "gene", indicating if match should be done by probe position or gene name.
ref	hg18 or hg19 (only relevant if matching is done by probe position).
Synonyms	data.frame with available synonym gene names to match (only relevant if matching is done by gene name).

Value

A matrix with the copy number features

Author(s)

Oscar M Rueda

iC10 documentation built on Sept. 11, 2024, 6:22 p.m.