Normalization of expression features. Several methods available in the package
CONOR can be used.
An object result of a call to
Several methods are available: "none": No normalization is done "scale": Each expression feature is scaled to have zero mean and standard deviation 1
No further normalization is needed on the copy number, as log2 ratios are comparable between platforms.
A list of the same format as
matchFeatures, but with
CONOR package is no longer maintained, the methods are not available temporarily. We will include more normalization methods in the next version of this package.
Oscar M Rueda
Ali HR et al. Genome-driven integrated classification of breast cancer validated in over 7,500 samples. Genome Biology 2014; 15:431. Curtis et al. The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature 2012; 486:346-352.
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