Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.
|Author||Oscar M Rueda|
|Date of publication||2014-09-26 12:13:01|
|Maintainer||Oscar M. Rueda <Oscar.Rueda@cruk.cam.ac.uk>|
iC10TrainingData-package: Training datasets for iC10 package.
IntClustMemb: Class Membership for the training set
Map.All: Probe mapping of the complete set of features of the training...
Map.CN: Probe mapping of the copy number features of the training...
Map.Exp: Probe mapping of the Expression features of the training set
train.CN: Copy number data for the training set
train.Exp: Expression data for the training set.