iC10TrainingData: Training datasets for iC10 package.

Share:

Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.

Author
Oscar M Rueda
Date of publication
2014-09-26 12:13:01
Maintainer
Oscar M. Rueda <Oscar.Rueda@cruk.cam.ac.uk>
License
GPL-3
Version
1.0.1

View on CRAN

Man pages

iC10TrainingData-package
Training datasets for iC10 package.
IntClustMemb
Class Membership for the training set
Map.All
Probe mapping of the complete set of features of the training...
Map.CN
Probe mapping of the copy number features of the training...
Map.Exp
Probe mapping of the Expression features of the training set
train.CN
Copy number data for the training set
train.Exp
Expression data for the training set.

Files in this package

iC10TrainingData
iC10TrainingData/NAMESPACE
iC10TrainingData/data
iC10TrainingData/data/train.CN.rda
iC10TrainingData/data/train.Exp.rda
iC10TrainingData/data/Map.All.rda
iC10TrainingData/data/datalist
iC10TrainingData/data/IntClustMemb.rda
iC10TrainingData/data/Map.CN.rda
iC10TrainingData/data/Map.Exp.rda
iC10TrainingData/MD5
iC10TrainingData/DESCRIPTION
iC10TrainingData/man
iC10TrainingData/man/train.CN.Rd
iC10TrainingData/man/IntClustMemb.Rd
iC10TrainingData/man/train.Exp.Rd
iC10TrainingData/man/Map.All.Rd
iC10TrainingData/man/iC10TrainingData-package.Rd
iC10TrainingData/man/Map.Exp.Rd
iC10TrainingData/man/Map.CN.Rd