iC10TrainingData: Training datasets for iC10 package.

Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.

AuthorOscar M Rueda
Date of publication2014-09-26 12:13:01
MaintainerOscar M. Rueda <Oscar.Rueda@cruk.cam.ac.uk>
LicenseGPL-3
Version1.0.1

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Files

iC10TrainingData
iC10TrainingData/NAMESPACE
iC10TrainingData/data
iC10TrainingData/data/train.CN.rda
iC10TrainingData/data/train.Exp.rda
iC10TrainingData/data/Map.All.rda
iC10TrainingData/data/datalist
iC10TrainingData/data/IntClustMemb.rda
iC10TrainingData/data/Map.CN.rda
iC10TrainingData/data/Map.Exp.rda
iC10TrainingData/MD5
iC10TrainingData/DESCRIPTION
iC10TrainingData/man
iC10TrainingData/man/train.CN.Rd iC10TrainingData/man/IntClustMemb.Rd iC10TrainingData/man/train.Exp.Rd iC10TrainingData/man/Map.All.Rd iC10TrainingData/man/iC10TrainingData-package.Rd iC10TrainingData/man/Map.Exp.Rd iC10TrainingData/man/Map.CN.Rd

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