iC10TrainingData: Training datasets for iC10 package.

Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.

Install the latest version of this package by entering the following in R:
install.packages("iC10TrainingData")
AuthorOscar M Rueda
Date of publication2014-09-26 12:13:01
MaintainerOscar M. Rueda <Oscar.Rueda@cruk.cam.ac.uk>
LicenseGPL-3
Version1.0.1

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Files

NAMESPACE
data
data/train.CN.rda
data/train.Exp.rda
data/Map.All.rda
data/datalist
data/IntClustMemb.rda
data/Map.CN.rda
data/Map.Exp.rda
MD5
DESCRIPTION
man
man/train.CN.Rd man/IntClustMemb.Rd man/train.Exp.Rd man/Map.All.Rd man/iC10TrainingData-package.Rd man/Map.Exp.Rd man/Map.CN.Rd

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