Map.All | R Documentation |
Probe mapping of the complete set of features of the training set
data(Map.All)
A data frame with 714 observations on the following 10 variables:
Probe_ID
a character vector with the Illumina probe ids that flank the features
Gene_symbol
a factor with the hugo gene names
Ensembl_ID
a factor with the ensemble ids
Cytoband
a factor with the cytobands (on hg18)
Genomic_location_hg18
a factor with the genomic locations on hg18
chromosome_name_hg18
a numeric vector with the chromosome on hg18
start_position_hg18
a numeric vector with the start position on hg18
end_position_hg18
a numeric vector with the end position on hg18
Synonyms_0
a character vector with the gene name synonyms of the feature
Gene.Chosen
a character vector (YES or NO) specifiying the probe chosen for gene-based selection
Genomic_location_hg19
a factor with the genomic locations on hg19
chromosome_name_hg19
a numeric vector with the chromosome on hg19
start_position_hg19
a numeric vector with the start position on hg19
end_position_hg19
a numeric vector with the end position on hg19
chromosome_name_hg38
a numeric vector with the chromosome on hg38
start_position_hg38
a numeric vector with the start position on hg38
end_position_hg38
a numeric vector with the end position on hg38
Curtis et al. The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature 2012; 486:346-352.
data(Map.All)
head(Map.All)
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