Map.CN: Probe mapping of the copy number features of the training...

Description Usage Format Source Examples

Description

Probe mapping of the copy number features of the training set.

Usage

1

Format

A data frame with 38 observations on the following 8 variables.

Probe_ID

a character vector with the Illumina probe ids that flank the features

Gene_symbol

a factor with the hugo gene names

Ensembl_ID

a factor with the ensemble ids

Cytoband

a factor with the cytobands (on hg18)

Genomic_location_hg18

a factor with the genomic locations on hg18

chromosome_name_hg18

a numeric vector with the chromosome on hg18

start_position_hg18

a numeric vector with the start position on hg18

end_position_hg18

a numeric vector with the end position on hg18

Genomic_location_hg19

a factor with the genomic locations on hg19

chromosome_name_hg19

a numeric vector with the chromosome on hg19

start_position_hg19

a numeric vector with the start position on hg19

end_position_hg19

a numeric vector with the end position on hg19

Source

Curtis et al. The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature 2012; 486:346-352.

Examples

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iC10TrainingData documentation built on Aug. 24, 2018, 5:04 p.m.