Map.CN: Probe mapping of the copy number features of the training...

In iC10TrainingData: Training Datasets for iC10 Package

Probe mapping of the copy number features of the training set.

Description

Probe mapping of the copy number features of the training set.

Usage

data(Map.CN)

Format

A data frame with 38 observations on the following 8 variables.

Probe_ID

a character vector with the Illumina probe ids that flank the features

Gene_symbol

a factor with the hugo gene names

Ensembl_ID

a factor with the ensemble ids

Cytoband

a factor with the cytobands (on hg18)

Genomic_location_hg18

a factor with the genomic locations on hg18

chromosome_name_hg18

a numeric vector with the chromosome on hg18

start_position_hg18

a numeric vector with the start position on hg18

end_position_hg18

a numeric vector with the end position on hg18

Genomic_location_hg19

a factor with the genomic locations on hg19

chromosome_name_hg19

a numeric vector with the chromosome on hg19

start_position_hg19

a numeric vector with the start position on hg19

end_position_hg19

a numeric vector with the end position on hg19

chromosome_name_hg38

a numeric vector with the chromosome on hg38

start_position_hg38

a numeric vector with the start position on hg38

end_position_hg38

a numeric vector with the end position on hg38

Source

Curtis et al. The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature 2012; 486:346-352.

Examples

data(Map.CN)
head(Map.CN)

iC10TrainingData documentation built on Sept. 11, 2024, 8:11 p.m.