iC10TrainingData-package: Training datasets for iC10 package.

Description Details Author(s) References See Also Examples

Description

Training datasets for iC10; which implements the classifier described in the METABRIC paper 'The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups' (Curtis et al., Nature 2012). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.

Details

Package: iC10TrainingData
Type: Package
Version: 1.0.0
Date: 2014-06-17
License: What license is it under?

data(train.CN) data(train.Exp)

Author(s)

Oscar M Rueda

Maintainer: <[email protected]>

References

Curtis et al. The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature 2012; 486:346-352. Tibshirani et al. Diagnosis of multiple cancer types by shrunken centroids of gene expression. PNAS 2002; 99(10):6567-6572.

See Also

iC10

Examples

1
2

iC10TrainingData documentation built on May 29, 2017, 9 p.m.