iCARH.getPathwaysMat: Builds pathways adjacency matrices
In iCARH: Integrative Conditional Autoregressive Horseshoe Model
Description
Usage
Arguments
Value
Examples
Description
Builds pathways adjacency matrices from specified KEGG identifiers.
Returns a list of pathway adjacency matrices based on shortest paths.
Usage
1
iCARH.getPathwaysMat(keggid, org)
Arguments
keggid
KEGG identifiers as specified in KEGG.
keggid is list that might contain multiple identifiers per metabolite.
org
organism
Value
list of pathway matrices based on shortest paths between two metabolites
Examples
1
2
3
4
5
6
keggid = list("C08363")
iCARH.getPathwaysMat(keggid, "rno")
gc()
keggid = list("Unk1", "C00350",c("C08363", "C01245"))
iCARH.getPathwaysMat(keggid, "rno")
gc()
iCARH documentation built on Aug. 28, 2020, 1:10 a.m.
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Description Usage Arguments Value Examples
Description
Builds pathways adjacency matrices from specified KEGG identifiers. Returns a list of pathway adjacency matrices based on shortest paths.
Usage
1 | iCARH.getPathwaysMat(keggid, org)
|
Arguments
keggid |
KEGG identifiers as specified in KEGG. keggid is list that might contain multiple identifiers per metabolite. |
org |
organism |
Value
list of pathway matrices based on shortest paths between two metabolites
Examples
1 2 3 4 5 6 | keggid = list("C08363")
iCARH.getPathwaysMat(keggid, "rno")
gc()
keggid = list("Unk1", "C00350",c("C08363", "C01245"))
iCARH.getPathwaysMat(keggid, "rno")
gc()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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