Description Usage Arguments Value Functions Examples
View source: R/summary-method.R
Group of functions to summarize and return model parameters of interest
1 2 3 4 5 6 7 8 9 | iCARH.params(
fit,
pars = c("theta", "alpha", "beta", "phi"),
path.names = NULL,
prob = 0.95,
use_cache = TRUE,
digits = 2,
...
)
|
fit |
Object returned by iCARH.model |
pars |
Parameters of interest ("theta","alpha","beta","phi"). All parameters by default. |
path.names |
Specify pathway names. |
prob |
Confidence level. Defaults to 0.95. |
use_cache |
passed to stan summary method. |
digits |
The number of significant digits for printing out the summary; defaults to 2. The effective sample size is always rounded to integers. |
... |
not used currently |
contain summaries for all chains. Included in the summaries are means, standard deviations (Est.Error), effective sample sizes (Eff.Sample), and split Rhats. Monte Carlo standard errors (MC.Error) are also reported.
iCARH.params
: Summary of model parameters
1 2 3 4 5 6 7 8 9 10 11 12 13 | data.sim = iCARH.simulate(4, 10, 14, 8, 2, path.probs=0.3, Zgroupeff=c(0,4),
beta.val=c(1,-1,0.5, -0.5))
XX = data.sim$XX
Y = data.sim$Y
Z = data.sim$Z
pathways = data.sim$pathways
rstan_options(auto_write = TRUE)
options(mc.cores = 2)
fit = iCARH.model(XX, Y, Z, groups=rep(c(0,1), each=5), pathways,
control = list(adapt_delta = 0.99, max_treedepth=10), iter = 2, chains = 2)
if(!is.null(fit$icarh))
iCARH.params(fit)
|
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