ExpandData: Expand branch abundance/incience and branch length

Description Usage Arguments Value Examples

View source: R/ExpanData.R

Description

ExpandData: Expand branch abundance/incience and branch length

Usage

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ExpandData(x, labels, phy, datatype = "abundance")

Arguments

x

a vector/matrix/list of species abundances or a matrix of raw incidence table.

labels

a vector of species name for input data.

phy

a phylogenetic tree with "phylog" class.

datatype

data type of input data: individual-based abundance data (datatype = "abundance"), species by sampling-units incidence matrix (datatype = "incidence_raw").

Value

a data.frame with sample size and sample coverage.

Examples

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data(bird)
bird.abu <- bird$abun
bird.inc <- bird$inci
bird.lab <- rownames(bird$abun)
bird.phy <- ade4::newick2phylog(bird$tre)
ExpandData(bird.abu, labels=bird.lab, phy=bird.phy, datatype="abundance")
ExpandData(bird.inc, labels=bird.lab, phy=bird.phy, datatype="incidence_raw")

iNextPD documentation built on May 2, 2019, 3:31 a.m.