plot.iNextPD: Plotting iNextPD object

In iNextPD: Interpolation and Extrapolation for Phylogenetic Diversity

Description

plot.iNextPD: Plotting method for objects inheriting from class "iNextPD"

Usage

## S3 method for class 'iNextPD'
plot(x, type = 1, se = TRUE, show.legend = TRUE,
  show.main = TRUE, col = NULL, xlab = NULL, ylab = NULL, ...)

Arguments

x	an iNextPD object computed by iNextPD.
type	three types of plots: sample-size-based rarefaction/extrapolation curve (type = 1); sample completeness curve (type = 2); coverage-based rarefaction/extrapolation curve (type = 3).
se	a logical variable to display confidence interval around the estimated sampling curve.
show.legend	a logical variable to display legend.
show.main	a logical variable to display title.
col	a vector for plotting color.
xlab	a title for the x axis.
ylab	a title for the y axis.
...	arguments to be passed to methods, such as graphical parameters (par).

Examples

# single-assemblage abundance data
data(bird)
bird.phy <- ade4::newick2phylog(bird$tre)
bird.lab <- rownames(bird$abun)
out1 <- iNextPD(bird$abun$North.site, bird.lab, bird.phy, 
        q=1, datatype="abundance", endpoint=500)
plot(x=out1, type=1)
plot(x=out1, type=2)
plot(x=out1, type=3)

iNextPD documentation built on May 2, 2019, 3:31 a.m.