bird: Bird phylogeny and survey data

In iNextPD: Interpolation and Extrapolation for Phylogenetic Diversity

Description

This data set describes the phylogeny of 41 birds as reported by Jetz et al. (2012). It also gives the two sites of species abundance and incidence data to these 41 species in November 2012 at Barrington Tops National Park, Australia.

Usage

bird

Format

A data frame with 53940 rows and 10 variables:

tre

is a character string giving the phylogenetic tree in Newick format.

abun

is a data frame with 41 species and two sites: North and South sites.

inic

is a list of two site (data.frame) for species by sampling-units incidence matrix.

Source

Jetz, W., Thomas, G.H., Joy, J.B., Hartmann, K. & Mooers A.O. (2012). The global diversity of birds in space and time. Nature, 491, 444-448.

Examples

data(bird)
bird.phy <- ade4::newick2phylog(bird$tre)
plot(bird.phy)
bird.abun <- bird$abun
bird.lab <- rownames(bird$abun)
ade4::table.phylog(bird.abun, bird.phy, csize=4, f.phylog=0.7)

Example output

iNextPD documentation built on May 2, 2019, 3:31 a.m.