PDBoot: Expand bootstraping branch abundance/incience and branch...

In iNextPD: Interpolation and Extrapolation for Phylogenetic Diversity

Description

PDBoot: Expand bootstraping branch abundance/incience and branch length

Usage

PDBoot(x, labels, phy, datatype = "abundance")

Arguments

x	a vector/matrix/list of species abundances or a matrix of raw incidence table.
labels	a vector of species name for input data.
phy	a phylogenetic tree with "phylog" class.
datatype	data type of input data: individual-based abundance data (datatype = "abundance"), species by sampling-units incidence matrix (datatype = "incidence_raw").

Value

a list of data.frame with bootstraping branch abundance/incience and branch length.

Examples

data(bird)
bird.lab <- rownames(bird$abun)
bird.phy <- ade4::newick2phylog(bird$tre)
bird.inc <- bird$inci
PDBoot(bird.inc, labels=bird.lab, phy=bird.phy, datatype="incidence_raw")

iNextPD documentation built on May 2, 2019, 3:31 a.m.